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Report for CCDS52219.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52219.1 Public Mus musculus 7 Vmn2r62 23 108 98 CCDS HistoryNCBI Gene:546964Re-query CCDS DB by CCDS ID:52219.1Re-query CCDS DB by GeneID:546964See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52219.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169130.2 ENSMUSP00000130557.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169130.2Link to Ensembl Protein Viewer:ENSMUSP00000130557.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169130Re-query CCDS DB by Protein ID:ENSMUSP00000130557
Original member Current member NCBI NM_001105059.1 NP_001098529.1 Accepted alive Link to Nucleotide Sequence:NM_001105059.1Link to Protein Sequence:NP_001098529.1Re-query CCDS DB by Nucleotide ID:NM_001105059Re-query CCDS DB by Protein ID:NP_001098529Link to BLAST:NP_001098529.1

Chromosomal Locations for CCDS 52219.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 42764438 42765357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 42785110 42785233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 42786798 42787025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 42787751 42788557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 42788910 42789201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 42793288 42793496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2580 nt):
ATGTTCTGGATTTTTATCTTTGGGGTTTTGTATATTCCCAATTTTGTATGTGCCTTTACTGGTGATAAGT
GCTATGGAACAATCAAGGAATATACTTACTATGAAGGAGATGTGACAATTGGTGCTTTTTTTCCTCTTCA
TAGTTACTACACACATGACCATGTTCCCCATGAAATTGACCCATACTTTTTCCAGGATATGTTCACACAG
TATAATTTTATGAACTACCAGTTACTTCTGGCCCTGGTGTTTACCATTGAGGAGATCAACAGAAATCCTC
ATCTTCTACCCAACACAACTCTTGGATTTGAGCATCATAACATTAAATTTTCTGAAAAGAATATTCTTCT
TGGTCCCTTTCTTTGGCTCGCAGGGTTGAGCAATCAACTAATTAATTATAACTGTGGACAGAAGAGAAAT
TTACCTGCAGCACTCACTGGAACATCATGGGCAATATCTGCCCATATTGGGACACTGCTACAACTCTACA
AAATACCTCAGCTCACTTTTGGATATTTTGATTCTAACATGAATGACCAAAGTCAGTTTAAAACTCTCTA
TCAGGTGGCCCCTGAGGACACATATCTGTCACTGGCCTTAGTGTCTTTGATGCTTCATTTCAGCTGGTCC
TGGGTGGGTCTGATTGTCCCAAATGACCCCAGAGGGACTCAGATTCTATCAGAGTTTAGAGATGTTATGG
AAAGTAATAGGATCTGCTTAGCCTTTGTGAAAATGATTCCTGGCACCTGGAATTCATATTCTGATTCAAT
ATGGAAAAATATGGAGAAGATTCAGGAATCATCAGCAAATGTGATTGTTATTTATGGGGACATTGTTTCT
TTACAAGGTTTAATGCGACACATTGCACAACTGTTAGTGACATGGAAAGTCTGGGTCTTGAACTCTCAAT
GGGATATTGACTACTATTCTGATTATTTTATGATAGAATCCTTTCATGGGAGTCTCATTTTTTCACACCA
TCATGAAGAGATGGTTGAGTTTGTGAATTTTGTTCAAACAGTGAATCCCTACACATACCCTGAAGATGAT
TATCTTCCTAAGTTTTGGGTTTTTTTCTTCAAGTGCTCTTTTTCTGAGTTTGATTGCCAACTTTTGGAGA
ACTGCCAACCCAATGCATCTTTGGACTTACTGCCCAGACACATTTTTGACCCAGCCATGAGTGAAGAGAG
CTACAACCTATACAATGCTGTGTATGCTCTTGCTCACAGCCTCCATGAGATGACTGTTCAACAAATACAG
ACACAACCATATGCCAATGGAGACGGAATGGCATTCTTGCCCTGGCAGATCCTCCCTTTTCTAAAGATCA
CCCTACTTAAAAACCATCCAAGTGGTCAAACTGTAATTGATGAGAGGAAAAACTTATATTCAGAATATGA
CATTTTCAATTTTTGGAATTTCCCAACGGGTCTTGGATTAAAGATGAAAGTAGGAACCTTTTCTCCAAAT
TCTCCCCAGGGTCAACAGTTGTCCTTATCTGAGGAAATGATACAATGGCCGACACAGTTTACAAAAATTC
CTCAGTCTGTGTGCAGTGAGAGCTGTAGGCCTGGATTCAGGAAAGCTGCCCAGGAGGGGAAGGCTGTCTG
CTGCTTTGATTGCATTCCTTGTGCAGACAATGAGATTTCCAATGAGACAGATATGGATCAGTGTGTGCAG
TGTCCAGAAAGTCACTATGCAAACTCAGAGAAGAACCACTGCCTCCAGAAATCTGTGAGCTTTTTGGCCT
ATGAAGAGCCCTTGGGGATGGGACTCACGATCACAGCACTGGACTTCTCTGTACTCACAGCTGTGGTTCT
TGTAGTCTTTGTGAAGCACAGAGACACACCCATTGTCAAGGCCAATAATCGGGTTCTCAGCTACACCCTG
CTATTGACACTCATAATCTGTTTTCTCAGTTGCTTGCTCTACATTGGACAGCCCAACACAGCCACCTGCA
TCTTGCAGCAAACAGCATTTGGAACTTTGTTCACTGTGGCTCTCTCCACAGTGTTAGCCAAAGCTATTGT
AGTGGTTACTGCATTCAAGGTCACCTCTCCAGCTAGAATGGTGAGGTGGTTAATAGTATCAGGGGCCCCA
AATTCCATTATTCCCATCTGCACACTGATCCAACTTATTATCTGTGGAATATGGCTGGCTACCTCTCCAC
CTTTTATTGATCAAAATGCTCATGTTGAACATGGTCACATCATCATTATGTGCAACAAGGGTTCTGCAGT
TGCTTTCCACTGTGTACTGGGATACCTTTGCTTCTTAGCACTTGGGAGCTACAGTATGGCTTTCTTATCC
AGGAATCTGCCTGACACATTCAACGAAGCCAAGTACCTGTCATTCAGCATGCAGGTATTCTTCTGTGTTT
GGATCACTTTTCTCCCTGTCTATCACAGCACAAAGGGAAAGGTCATGGTGGCTATGGAAGTTTTCTCTGT
CTTGGCTTCCAGTATAGCACTCCTTGCTTTGATATTTGCCCCCAAGTGCTACATAATTTTGTTAAGGCCA
GATAAGAACTCACGTCTTGACATCAGGCACAAAATACATTCAAGAAGAGTAGTCATTTAA

Translation (859 aa):
MFWIFIFGVLYIPNFVCAFTGDKCYGTIKEYTYYEGDVTIGAFFPLHSYYTHDHVPHEIDPYFFQDMFTQ
YNFMNYQLLLALVFTIEEINRNPHLLPNTTLGFEHHNIKFSEKNILLGPFLWLAGLSNQLINYNCGQKRN
LPAALTGTSWAISAHIGTLLQLYKIPQLTFGYFDSNMNDQSQFKTLYQVAPEDTYLSLALVSLMLHFSWS
WVGLIVPNDPRGTQILSEFRDVMESNRICLAFVKMIPGTWNSYSDSIWKNMEKIQESSANVIVIYGDIVS
LQGLMRHIAQLLVTWKVWVLNSQWDIDYYSDYFMIESFHGSLIFSHHHEEMVEFVNFVQTVNPYTYPEDD
YLPKFWVFFFKCSFSEFDCQLLENCQPNASLDLLPRHIFDPAMSEESYNLYNAVYALAHSLHEMTVQQIQ
TQPYANGDGMAFLPWQILPFLKITLLKNHPSGQTVIDERKNLYSEYDIFNFWNFPTGLGLKMKVGTFSPN
SPQGQQLSLSEEMIQWPTQFTKIPQSVCSESCRPGFRKAAQEGKAVCCFDCIPCADNEISNETDMDQCVQ
CPESHYANSEKNHCLQKSVSFLAYEEPLGMGLTITALDFSVLTAVVLVVFVKHRDTPIVKANNRVLSYTL
LLTLIICFLSCLLYIGQPNTATCILQQTAFGTLFTVALSTVLAKAIVVVTAFKVTSPARMVRWLIVSGAP
NSIIPICTLIQLIICGIWLATSPPFIDQNAHVEHGHIIIMCNKGSAVAFHCVLGYLCFLALGSYSMAFLS
RNLPDTFNEAKYLSFSMQVFFCVWITFLPVYHSTKGKVMVAMEVFSVLASSIALLALIFAPKCYIILLRP
DKNSRLDIRHKIHSRRVVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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