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Report for CCDS40013.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
40013.1 |
Public |
Mus musculus |
7 |
Grm5 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:108071](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:40013.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:108071](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 7 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 40013.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000107263.8 |
ENSMUSP00000102884.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000107263.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000102884.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000107263](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000102884](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000125009.8 |
ENSMUSP00000118393.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000125009.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000118393.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000125009](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000118393](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001081414.2 |
NP_001074883.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001081414.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001074883.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001081414](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001074883](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001074883.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 40013.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3516 nt): ATGGTCCTTCTGTTGATTCTGTCAGTCCTACTTCTGAAAGAAGATGTACGAGGAAGTGCACAGTCCAGTG AGAGGAGGGTGGTGGCTCACATGCCAGGTGACATTATTATTGGAGCTCTCTTCTCGGTCCACCACCAACC AACTGTGGACAAAGTTCATGAGAGGAAGTGTGGGGCAGTCCGTGAGCAGTATGGCATTCAGAGAGTGGAA GCCATGCTGCATACCTTGGAAAGGATCAATTCAGATCCCACACTCTTGCCCAACATCACACTAGGCTGTG AGATAAGAGATTCCTGCTGGCATTCTGCTGTGGCCCTAGAGCAAAGCATTGAGTTTATAAGGGATTCCCT CATCTCTTCGGAAGAGGAAGAAGGCTTGGTACGCTGTGTAGATGGCTCTTCTTCCTTCCGCTCCAAGAAA CCCATAGTGGGAGTCATTGGGCCTGGCTCGAGTTCTGTGGCCATTCAAGTTCAGAACTTGCTCCAGCTTT TCAACATACCTCAGATTGCTTACTCTGCAACTAGCATGGATTTGAGTGACAAGACTCTATTCAAGTACTT CATGAGGGTTGTACCTTCGGATGCCCAGCAAGCCCGAGCCATGGTAGACATAGTGAAGAGATACAACTGG ACTTATGTCTCAGCTGTGCACACAGAAGGCAACTATGGAGAAAGTGGGATGGAGGCTTTCAAAGATATGT CAGCGAAGGAAGGGATTTGCATCGCCCACTCTTACAAAATCTACAGCAATGCTGGGGAACAGAGCTTTGA CAAGCTGTTGAAAAAGCTCAGAAGTCATTTACCTAAAGCCCGGGTGGTAGCCTGCTTCTGTGAAGGCATG ACAGTTCGAGGTCTGCTCATGGCCATGAGACGCTTGGGTCTAGCAGGGGAATTTCTACTTCTGGGCAGTG ATGGCTGGGCTGACAGGTATGACGTGACAGATGGGTATCAGCGAGAAGCTGTCGGTGGGATTACAATCAA GCTCCAGTCTCCTGATGTCAAGTGGTTTGATGATTATTATCTGAAGCTCCGGCCAGAAACAAACCTCAGA AACCCTTGGTTTCAAGAATTTTGGCAGCATCGTTTTCAGTGCCGGCTAGAAGGGTTTGCACAGGAGAACA GCAAGTACAACAAGACTTGCAACAGTTCTCTAACTCTGAGAACGCATCATGTTCAAGATTCCAAAATGGG ATTTGTGATCAATGCAATCTATTCTATGGCTTATGGGCTCCACAACATGCAGATGTCCCTGTGTCCAGGC TATGCAGGCCTCTGTGATGCAATGAAGCCAATTGATGGGCGGAAACTTTTGGACTCCCTGATGAAAACCA ACTTTACTGGAGTTTCCGGAGATATGATTCTATTTGATGAAAATGGAGACTCTCCAGGAAGGTATGAAAT AATGAATTTCAAGGAAATGGGAAAAGATTATTTTGATTACATCAATGTTGGAAGTTGGGACAATGGGGAA TTAAAAATGGATGATGATGAAGTGTGGTCCAAGAAAAATAACATCATCAGATCTGTGTGCAGTGAACCGT GTGAGAAAGGACAGATAAAGGTGATCCGGAAGGGAGAAGTCAGCTGTTGTTGGACCTGCACACCTTGTAA GGAGAATGAGTATGTTTTTGATGAGTACACCTGCAAGGCGTGCCAACTGGGGTCCTGGCCCACTGACGAC TTGACAGGTTGTGATTTGATCCCAGTCCAGTATCTTCGATGGGGTGACCCTGAGCCCATTGCAGCTGTGG TGTTTGCCTGCCTCGGTCTGCTAGCCACCCTCTTCGTTACTGTAATCTTCATCATTTATCGGGACACTCC AGTGGTCAAGTCTTCCAGCAGGGAACTCTGCTACATTATCCTTGCTGGCATCTGCCTGGGTTACTTGTGT ACCTTCTGCCTCATTGCAAAGCCCAAACAGATTTACTGCTACCTTCAGAGAATTGGCATCGGTCTCTCTC CAGCCATGAGCTACTCAGCCCTTGTAACGAAGACCAACCGTATTGCAAGGATTCTAGCTGGCAGCAAGAA GAAGATCTGTACCAAAAAGCCCAGATTCATGAGCGCCTGTGCTCAGTTAGTGATCGCTTTCATTCTCATC TGTATACAGTTGGGTATTATTGTGGCCCTCTTTATCATGGAGCCTCCGGATATAATGCATGACTATCCAA GCATCCGAGAAGTCTACTTGATTTGTAACACCACCAACCTAGGGGTTGTCACTCCTCTTGGATACAATGG ATTATTGATTTTGAGTTGCACATTCTATGCGTTCAAGACCAGAAATGTTCCAGCCAACTTTAACGAGGCC AAATATATTGCTTTCACCATGTACACAACCTGCATCATATGGCTGGCCTTTGTGCCTATCTACTTTGGCA GCAACTACAAAATCATCACCATGTGTTTCTCAGTCAGCCTCAGTGCCACAGTGGCCCTGGGTTGCATGTT TGTGCCGAAGGTGTACATCATCCTAGCCAAACCGGAGAGAAATGTGCGCAGCGCCTTCACAACCTCTACA GTGGTGCGCATGCACGTAGGAGATGGCAAGTCATCATCCGCTGCCAGCAGATCCAGCAGCCTAGTCAACC TGTGGAAGAGGAGGGGCTCGTCTGGGGAAACCCTAAGCTCCAATGGAAAATCCGTGACTTGGGCCCAGAA TGAGAAGAGCACCCGGGGGCAGCACCTGTGGCAGCGACTGTCTGTCCATATCAACAAGAAGGAGAACCCC AACCAGACAGCAGTCATCAAACCCTTCCCCAAGAGCACAGAGAGCCGCGGGCAGGGTGCAGGGGCAGGTG GTGGCTCTGGCCCCGGTGCAGCTGGTGCTGGTAGCGCAGGATGCACAGCGACAGGCGGCCCAGAGCCACC AGACGCCGGCCCCAAGGCGCTTTATGATGTCGCAGAGGCAGAGGAGCGCTTCCCAGCGGCTGCCAGGCCG CGCTCGCCATCGCCCATCAGTACGCTGAGCCACCTGGCAGGCTCGGCGGGCCGCACAGACGACGACGCGC CGTCGCTGCACTCGGAGACCGCTGCACGCAGCAGCTCATCCCAGGGCTCGCTCATGGAGCAGATTAGCAG CGTGGTGACGCGCTTCACCGCCAACATCACCGAGCTCAACTCCATGATGTTGTCCACCGCGGCTGCGCCG GGGCCCCCTGGTACCCCTATCTGCTCTTCCTACCTGATCCCCAAAGAGATCCAGCTGCCCACGACCATGA CGACCTTCGCAGAGATCCAGCCTCTGCCGGCCATCGAGGTGACCGGAGGAGCTCAGCCGGCGACAGGGCC ATCACCTGCCCAAGAGACGCCCGCAGGAGCTGAAGCCGCCCCAGGAAAACCGGATCTGGAGGAGCTGGTG GCCCTCACTCCACCATCGCCCTTCAGGGACTCGGTGGACTCGGGGAGCACCACCCCAAACTCTCCAGTCT CCGAATCGGCCCTCTGCATCCCATCCTCTCCCAAATATGACACTCTCATCATCAGAGATTACACGCAGAG TTCTTCATCGTTGTGA
Translation (1171 aa): MVLLLILSVLLLKEDVRGSAQSSERRVVAHMPGDIIIGALFSVHHQPTVDKVHERKCGAVREQYGIQRVE AMLHTLERINSDPTLLPNITLGCEIRDSCWHSAVALEQSIEFIRDSLISSEEEEGLVRCVDGSSSFRSKK PIVGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSMDLSDKTLFKYFMRVVPSDAQQARAMVDIVKRYNW TYVSAVHTEGNYGESGMEAFKDMSAKEGICIAHSYKIYSNAGEQSFDKLLKKLRSHLPKARVVACFCEGM TVRGLLMAMRRLGLAGEFLLLGSDGWADRYDVTDGYQREAVGGITIKLQSPDVKWFDDYYLKLRPETNLR NPWFQEFWQHRFQCRLEGFAQENSKYNKTCNSSLTLRTHHVQDSKMGFVINAIYSMAYGLHNMQMSLCPG YAGLCDAMKPIDGRKLLDSLMKTNFTGVSGDMILFDENGDSPGRYEIMNFKEMGKDYFDYINVGSWDNGE LKMDDDEVWSKKNNIIRSVCSEPCEKGQIKVIRKGEVSCCWTCTPCKENEYVFDEYTCKACQLGSWPTDD LTGCDLIPVQYLRWGDPEPIAAVVFACLGLLATLFVTVIFIIYRDTPVVKSSSRELCYIILAGICLGYLC TFCLIAKPKQIYCYLQRIGIGLSPAMSYSALVTKTNRIARILAGSKKKICTKKPRFMSACAQLVIAFILI CIQLGIIVALFIMEPPDIMHDYPSIREVYLICNTTNLGVVTPLGYNGLLILSCTFYAFKTRNVPANFNEA KYIAFTMYTTCIIWLAFVPIYFGSNYKIITMCFSVSLSATVALGCMFVPKVYIILAKPERNVRSAFTTST VVRMHVGDGKSSSAASRSSSLVNLWKRRGSSGETLSSNGKSVTWAQNEKSTRGQHLWQRLSVHINKKENP NQTAVIKPFPKSTESRGQGAGAGGGSGPGAAGAGSAGCTATGGPEPPDAGPKALYDVAEAEERFPAAARP RSPSPISTLSHLAGSAGRTDDDAPSLHSETAARSSSSQGSLMEQISSVVTRFTANITELNSMMLSTAAAP GPPGTPICSSYLIPKEIQLPTTMTTFAEIQPLPAIEVTGGAQPATGPSPAQETPAGAEAAPGKPDLEELV ALTPPSPFRDSVDSGSTTPNSPVSESALCIPSSPKYDTLIIRDYTQSSSSL
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