NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS78545.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78545.1 Public Mus musculus 1 Eya1 23 108 98 CCDS HistoryNCBI Gene:14048Re-query CCDS DB by CCDS ID:78545.1Re-query CCDS DB by GeneID:14048See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78545.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027066.12 ENSMUSP00000027066.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027066.12Link to Ensembl Protein Viewer:ENSMUSP00000027066.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027066Re-query CCDS DB by Protein ID:ENSMUSP00000027066
Original member Current member EBI ENSMUST00000190337.6 ENSMUSP00000141112.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190337.6Link to Ensembl Protein Viewer:ENSMUSP00000141112.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190337Re-query CCDS DB by Protein ID:ENSMUSP00000141112
Original member NCBI NM_001310459.1 NP_001297388.1 Updated not alive Link to Nucleotide Sequence:NM_001310459.1Link to Protein Sequence:NP_001297388.1Re-query CCDS DB by Nucleotide ID:NM_001310459Re-query CCDS DB by Protein ID:NP_001297388
Current member NCBI NM_001310459.2 NP_001297388.1 Accepted alive Link to Nucleotide Sequence:NM_001310459.2Link to Protein Sequence:NP_001297388.1Re-query CCDS DB by Nucleotide ID:NM_001310459Re-query CCDS DB by Protein ID:NP_001297388Link to BLAST:NP_001297388.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297388.1 591 P97767-1 591 100% 0 0

Chromosomal Locations for CCDS 78545.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 14170916 14170996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14179480 14179580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14183157 14183278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14183381 14183495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14184349 14184509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14184626 14184684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14208895 14208984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14229493 14229576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14231413 14231552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14252428 14252614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14253020 14253102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14270705 14270842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14274065 14274207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14274534 14274603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14283121 14283198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 14302770 14302893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1776 nt):
ATGGAAATGCAGGATCTAACCAGCCCGCATAGCCGACTGAGTGGTAGTAGCGAATCCCCCAGTGGTCCCA
AACTCGATAGCTCTCATATAAATAGTACTTCCATGACTCCCAATGGCACCGAAGTTAAAACAGAGCCAAT
GAGCAGCAGTGAAATAGCTTCAACAGCAGCAGACGGGTCTTTAGACAGTTTCTCAGGTTCAGCTCTCGGA
AGCAGCAGCTTTAGTCCAAGACCAGCTCACCCGTTCTCTCCACCACAGATTTATCCTTCCAAATCATACC
CACATATTCTCCCTACCCCTTCCTCACAAACTATGGCTGCATATGGGCAAACACAGTTTACCACAGGAAT
GCAACAAGCCACAGCCTACGCCACGTACCCACAGCCTGGACAGCCCTATGGAATTTCCTCCTATGGTGCA
TTGTGGGCAGGCATCAAGACGGAAAGTGGATTGTCACAGTCTCAGTCACCTGGACAGACGGGATTTCTTA
GCTATGGCACAAGCTTTGGTACCCCTCAACCTGGACAGGCACCGTACAGCTACCAGATGCAAGGTAGCAG
CTTTACCACGTCATCAGGATTATATTCAGGAAATAATTCACTCACCAACTCCTCCGGATTCAACAGTTCA
CAGCAGGACTATCCGTCTTATCCCGGCTTTGGCCAGGGTCAGTACGCACAGTATTATAACAGCTCGCCGT
ATCCAGCACACTACATGACGAGCAGTAACACCAGCCCGACCACACCGTCCACCAATGCCACTTACCAACT
CCAGGAACCACCTTCTGGCGTCACAAGTCAGGCGGTCACAGACCCCACAGCAGAGTACAGTACAATCCAC
AGTCCTTCCACACCCATTAAAGAGACTGACTCCGAGCGGCTGCGTCGAGGTTCAGATGGGAAGTCACGTG
GCCGAGGCAGAAGAAACAATAATCCCTCCCCTCCCCCGGATTCTGACCTTGAGAGAGTGTTCATCTGGGA
CCTGGACGAGACCATCATTGTTTTCCACTCCTTGCTCACGGGGTCCTACGCCAACAGATACGGGAGGGAT
CCACCTACTTCTGTTTCCCTGGGACTACGAATGGAAGAGATGATTTTCAACTTGGCAGACACACATCTAT
TTTTCAATGACCTAGAAGAGTGTGACCAAGTCCATATAGATGATGTTTCATCAGACGACAACGGCCAGGA
CCTGAGCACATACAACTTTGGAACAGATGGCTTTCCTGCTGCAGCCACCAGTGCTAATTTATGCCTGGCA
ACTGGTGTCCGAGGTGGTGTGGACTGGATGCGGAAACTGGCCTTCCGCTACAGACGAGTAAAAGAGATCT
ACAACACCTACAAAAACAACGTGGGAGGTCTGCTTGGCCCAGCTAAGAGGGAAGCCTGGCTCCAGCTGAG
GGCTGAGATTGAGGCACTCACAGACTCCTGGCTGACCCTGGCCCTGAAGGCCCTCTCCCTCATCCACTCC
CGGACGAACTGTGTGAATATTTTAGTAACAACTACGCAGCTCATCCCAGCATTGGCAAAAGTCCTGCTAT
ATGGATTAGGAATTGTGTTTCCAATAGAAAATATTTACAGTGCAACTAAAATAGGAAAGGAAAGCTGTTT
TGAGAGGATAATCCAAAGGTTTGGAAGGAAAGTGGTATACGTTGTCATAGGAGATGGTGTGGAAGAAGAG
CAAGGGGCAAAAAAGCATGCTATGCCCTTCTGGAGGGTCTCCAGTCACTCGGACCTCATGGCACTGCATC
ATGCCTTGGAATTAGAGTACCTGTAA

Translation (591 aa):
MEMQDLTSPHSRLSGSSESPSGPKLDSSHINSTSMTPNGTEVKTEPMSSSEIASTAADGSLDSFSGSALG
SSSFSPRPAHPFSPPQIYPSKSYPHILPTPSSQTMAAYGQTQFTTGMQQATAYATYPQPGQPYGISSYGA
LWAGIKTESGLSQSQSPGQTGFLSYGTSFGTPQPGQAPYSYQMQGSSFTTSSGLYSGNNSLTNSSGFNSS
QQDYPSYPGFGQGQYAQYYNSSPYPAHYMTSSNTSPTTPSTNATYQLQEPPSGVTSQAVTDPTAEYSTIH
SPSTPIKETDSERLRRGSDGKSRGRGRRNNNPSPPPDSDLERVFIWDLDETIIVFHSLLTGSYANRYGRD
PPTSVSLGLRMEEMIFNLADTHLFFNDLEECDQVHIDDVSSDDNGQDLSTYNFGTDGFPAAATSANLCLA
TGVRGGVDWMRKLAFRYRRVKEIYNTYKNNVGGLLGPAKREAWLQLRAEIEALTDSWLTLALKALSLIHS
RTNCVNILVTTTQLIPALAKVLLYGLGIVFPIENIYSATKIGKESCFERIIQRFGRKVVYVVIGDGVEEE
QGAKKHAMPFWRVSSHSDLMALHHALELEYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH