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Report for CCDS90687.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90687.1 Public Mus musculus 9 Ano10 23 108 98 CCDS HistoryNCBI Gene:102566Re-query CCDS DB by CCDS ID:90687.1Re-query CCDS DB by GeneID:102566See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90687.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000214409.1 ENSMUSP00000151189.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214409.1Link to Ensembl Protein Viewer:ENSMUSP00000151189.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214409Re-query CCDS DB by Protein ID:ENSMUSP00000151189
Original member NCBI NM_001271873.1 NP_001258802.1 Updated not alive Link to Nucleotide Sequence:NM_001271873.1Link to Protein Sequence:NP_001258802.1Re-query CCDS DB by Nucleotide ID:NM_001271873Re-query CCDS DB by Protein ID:NP_001258802
Current member NCBI NM_001271873.2 NP_001258802.1 Accepted alive Link to Nucleotide Sequence:NM_001271873.2Link to Protein Sequence:NP_001258802.1Re-query CCDS DB by Nucleotide ID:NM_001271873Re-query CCDS DB by Protein ID:NP_001258802Link to BLAST:NP_001258802.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258802.1 601 Q8BH79-2 601 100% 0 0

Chromosomal Locations for CCDS 90687.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 122176413 122176478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122201771 122201887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122251147 122251275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122252936 122253127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122257056 122257238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122258917 122258991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122259535 122259590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122261084 122261479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122263670 122263789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122271199 122271333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122272367 122272564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122275511 122275649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1806 nt):
ATGAGAGTGACTTTATCAACGCTGGATACTTGTGAGAGCTCCTTCACACCTCTAGTGGTCATAGAACTCG
CCCAGGATGTCAAAGATGAAACCAAAGAATGGCTCAAAAACAGAATCATTGCCAAGAAGAAAGATGGAGG
TGCCCAGCTATTGTTTAGACCACTGCTAAATAAGTATGAGAAAGAAACCCTAGAAAACCAGAATTTATAC
CTTGTTGGTGCCTCCAATGTCCGACTGTTACTGGGGGCAGAAGCAGTCGGTCTGGTGAAGGAATGTACGG
ACGCTGCCATGCGGGCCTTCACCTATGGAACACGCCACAACTTTAAAGGTTTCCATGATAACAATAATGA
CTTCCTCACCATGGCTGAGTGTCAGTTCATTATCAAACACGAACTTGAGAATCTTAGAGCTAGAGACGAG
AAGATGATCCCTGGCTACCCACAGGCCAAACTGTACCCTGGGAAGTCGCTGATGAGGAGACTGCTCACGT
CTGGCATCGTGACCCAAGTGTTCCCGCTGCATGACACTGAAGCCCTGAAGAAGCTGGAGGACACGTGGTA
CACTCGGTTTGCTCTCAAGTACCAGCCCATAGTGATCCTGGAGGTGTGGAAGCGTGGCTGTGCCAACATG
ACCTATCGCTGGGGGACTCTGGTCATGAAGAGGCAGTTTGAGGAGCCCCGGCCAGGGTTTCATGGAGTCC
TTGGCATCAATTCAGTCACGGGCCGGGAGGAGCCCCTCTACTCGAGCTACAAGAGACAACTGCGCATCTA
CCTAGTCTCTCTGCCATTTGTGTGCCTCTGCCTTTATTTCTCCCTTTATGTCATGATGATCTACTTTGAC
ATGGAGGACTGGGCCTTGAGTCTCCACGAGGACAGTGGGTCTGAGTGGACCAGCCTTCTGCTGTATGTAC
CCAGCATTGTTTATGCCGTTGTGATTGAGATCATGAACCGCCTCTATCGATATGCTGCCGAGTTCCTAAC
ATCTTGGGAGAATCACAGATTGGAATCTGCCTACCAGAATCATCTCGTTCTGAAAGTGTTGGTGTTCAAC
TTCCTGAATTGCTTCGCCTCACTCTTCTACATTGCCTTTGTCCTGAAGGACATGAAGCTTTTGCGCCAGA
GCTTGGCCACACTCCTGATCACCTCCCAGATTCTGAACCAAGTCGTAGAATCTCTTCTTCCTTACTGGCT
GCAGCGGAAGTACTGTGCGAGGGTAAAGCGGAAGGTTCAGGCATTAAAGTCTGAGGTCGACACAACCTTG
TATGAGCAAGTCCTCCTGGAGAAGGAAATGGGAACGTACCTGGGAACCTTTGATGATTACCTGGAGTTGT
TCCTGCAGTTTGGCTATGTGAGCCTTTTCTCTTGTGTTTACCCGCTAGCAGCTGCCTTTGCTGTGTTAAA
TAACTTCACTGAAGTCAACTCAGATGCCTTGAAAATGTGCAGGGTCTTCAAACGGCCATTTGCAGAACCT
TCGGCCAGTATTGGCGTATGGCAGTTGGCTTTTGAAACGATGAGCGTTATATCCGTGGTCACTAACTGTG
CTCTGATTGGAATGTCACCACAAGTGAATGCAGTCTTTCCAGAATCCAAAACAGACCTTGTTCTGATTGT
GGTGGCCGTAGAGCATGCACTCTTGGCTCTGAAGTTCATACTCGCATTTGCCATCCCTGATAAACCACGG
CACATCCAACAGAAACTGGCCAGATTGGAATTCGAATCTTTGGAGGCACTCAAGCAACAGCAAATGAAGC
TGGTGGCAGAAAACCTGAAGGAGGAGTACCAGGAAGATGGGAAGGAAGCTACCTGA

Translation (601 aa):
MRVTLSTLDTCESSFTPLVVIELAQDVKDETKEWLKNRIIAKKKDGGAQLLFRPLLNKYEKETLENQNLY
LVGASNVRLLLGAEAVGLVKECTDAAMRAFTYGTRHNFKGFHDNNNDFLTMAECQFIIKHELENLRARDE
KMIPGYPQAKLYPGKSLMRRLLTSGIVTQVFPLHDTEALKKLEDTWYTRFALKYQPIVILEVWKRGCANM
TYRWGTLVMKRQFEEPRPGFHGVLGINSVTGREEPLYSSYKRQLRIYLVSLPFVCLCLYFSLYVMMIYFD
MEDWALSLHEDSGSEWTSLLLYVPSIVYAVVIEIMNRLYRYAAEFLTSWENHRLESAYQNHLVLKVLVFN
FLNCFASLFYIAFVLKDMKLLRQSLATLLITSQILNQVVESLLPYWLQRKYCARVKRKVQALKSEVDTTL
YEQVLLEKEMGTYLGTFDDYLELFLQFGYVSLFSCVYPLAAAFAVLNNFTEVNSDALKMCRVFKRPFAEP
SASIGVWQLAFETMSVISVVTNCALIGMSPQVNAVFPESKTDLVLIVVAVEHALLALKFILAFAIPDKPR
HIQQKLARLEFESLEALKQQQMKLVAENLKEEYQEDGKEAT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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