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Report for CCDS90640.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90640.1 Public Mus musculus 9 U2surp 23 108 98 CCDS HistoryNCBI Gene:67958Re-query CCDS DB by CCDS ID:90640.1Re-query CCDS DB by GeneID:67958See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90640.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000217176.1 ENSMUSP00000151121.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217176.1Link to Ensembl Protein Viewer:ENSMUSP00000151121.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217176Re-query CCDS DB by Protein ID:ENSMUSP00000151121
Original member Current member NCBI NM_001357974.1 NP_001344903.1 Accepted alive Link to Nucleotide Sequence:NM_001357974.1Link to Protein Sequence:NP_001344903.1Re-query CCDS DB by Nucleotide ID:NM_001357974Re-query CCDS DB by Protein ID:NP_001344903Link to BLAST:NP_001344903.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344903.1 1028 Q6NV83-2 1028 100% 0 0

Chromosomal Locations for CCDS 90640.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 95461405 95461543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95462703 95462879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95464363 95464481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95466546 95466656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95472043 95472202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95474421 95474487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95475202 95475297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95476107 95476263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95477400 95477522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95479267 95479354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95481653 95481732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95482092 95482254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95484170 95484333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95484408 95484474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95485561 95485665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95488746 95488789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95489700 95489911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95490090 95490255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95491091 95491173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95491268 95491300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95491382 95491476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95492324 95492391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95493098 95493231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95493703 95493817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95495835 95495933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95500688 95500819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95502540 95502584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95511817 95511861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3087 nt):
ATGGCCGACAAAACGCCAGGCGGATCTCAGAAGGCCAGTTCAAAGAACCGATCATCAGATGTTCATTCAT
CTGGATCTTCAGATGCACATATGGATGCATCTGGACCCTCAGATAGTGATATGCCAAGTCGAACACGACC
TAAAAGCCCAAGAAAACACAATTATAGGAATGAGAGTTCCCGCGAAAGCCTTTGCGATTCTCCTCATCAG
AATCTCTCAAGACCTCTTCTAGAAAACAAGCTTAAAGCATTCAGTATTGGAAAAATGAGCACAGCAAAGC
GAACCCTAAGTAAGAAGGAACAAGAGGAACTGAAGAAAAAGGAGGATGAGAAGGCAGCGGCCGAAATTTA
TGAGGAATTTCTTGCTGCTTTTGAAGGAAGTGATGGTAATAAAGTGAAAACGTTTGTTCGAGGCGGGGTT
GTTAATGCAGCTAAAGATGAACATGAAACAGATGAAAAAAGAGGTAAAATCTATAAACCATCTTCAAGGT
TTGCAGATCAAAAAAATCCTCCAAATCAGTCATCCAATGAAAGGCCGCCATCTCTTCTTGTGATAGAGAC
GAAAAAACCCCCACTGAAAAAAGGGGAGAAGGAAAAGAAAAAAAGCAATTTGGAACTTTTCAAAGAAGAA
CTAAAACAAATTCAGGAAGAACGTGATGAGAGACATAAAACAAAAGGCAGGTTAAGTCGGTTTGAGCCTC
CTCAGTCAGACTCTGATGGTCAGCGACGTTCTATGGATGTGCCTTCAAGAAGAAATAGATCGTCTGTTCT
TGATGATTATGCACCTGGCTCACATGATGTAGGAGATCCCAGCACTACAAATTTATACCTTGGAAACATT
AATCCACAGATGAATGAAGAAATGCTGTGCCAAGAATTTGGAAGATTTGGACCATTAGCTAGTGTAAAAA
TTATGTGGCCTAGAACTGATGAAGAAAGAGCACGAGAAAGAAACTGTGGCTTTGTGGCTTTTATGAACAG
AAGAGATGCTGAAAGAGCTCTAAAGAACTTAAACGGAAAAATGATTATGTCTTTTGAAATGAAGTTAGGT
TGGGGTAAAGCTGTGCCTATTCCTCCACATCCAATATACATTCCGCCTTCTATGATGGAACACACGCTCC
CCCCACCTCCATCCGGACTGCCTTTTAATGCGCAGCCTAGAGAGCGATTAAAAAACCCCAATGCTCCCAT
GTTACCACCACCTAAAAACAAGGAGGATTTCGAGAAGACTCTGTCGCAAGCCATAGTCAAAGTGGTTATC
CCAACAGAAAGGAATTTACTCGCCCTGATACACCGAATGATAGAATTTGTTGTACGTGAAGGGCCAATGT
TTGAAGCTATGATTATGAACAGAGAAATCAACAATCCTATGTTCAGGTTCTTATTTGAAAACCAGACACC
AGCCCATGTTTACTACAGGTGGAAGCTTTATTCTATTCTGCAGGGAGATTCTCCAACGAAATGGCGGACA
GAAGATTTTCGAATGTTCAAAAATGGATCTTTTTGGAGGCCACCACCTTTAAATCCATACCTTCATGGGA
TGTCAGAGGAGCAAGAGACAGAAGCGTTTGTAGAAGAACCTAGTAAGAAGGGAGCACTCAAGGAAGAACA
GCGGGATAAGTTAGAAGAAATCTTGCGAGGATTAACTCCAAGGAAAAATGATATTGGAGATGCCATGGTT
TTCTGTCTTAATAATGCTGAAGCTGCTGAAGAAATAGTGGATTGCATTACTGAGTCGCTGTCCATCTTAA
AGACACCTCTTCCCAAGAAGATTGCCAGATTATATTTGGTTTCTGATGTTTTATACAACTCTTCAGCCAA
AGTTGCCAATGCTTCATATTACAGGAAATTTTTTGAAACAAAGCTATGCCAGATATTTTCAGACCTCAAT
GCTACTTATCGTACAATTCAAGGCCATTTACAATCTGAAAACTTTAAGCAACGGGTAATGACCTGCTTCA
GAGCATGGGAAGATTGGGCAATTTATCCAGAACCATTTTTGATCAAACTTCAGAATATTTTCTTAGGACT
TGTAAATATCATTGAAGAAAAGGAAACAGAGGATGTGCCGGATGATCTTGACGGTGCTCCCATCGAGGAG
GAGCTTGACGGGGCGCCTCTGGAGGATGTGGATGGGATTCCCATCGATGCCACTCCCATCGATGACCTGG
ATGGGGTCCCTATAAAGAGTCTTGATGATGATCTGGATGGAGTGCCTTTGGATGCAACTGAAGACTCAAA
GAAGAATGAACCCATATTTAAAGTTGCCCCATCAAAATGGGAGGCTGTAGATGAATCTGAATTGGAAGCA
CAAGCGGTAACGACTTCTAAGTGGGAGTTATTTGACCAGCATGAAGAGTCAGAAGAAGAGGAAAACCAAA
ATCAGGAAGAAGAGAGTGAAGATGAAGAAGACACTCAGAGCTCCAAGTCTGAAGAGCATCATTTGTACTC
TAACCCAGTCAGAGAAGAGGCGACTGAGTCTAAGTTCTCTAAGTACTCCGAAATGAGTGAAGAAAAGCGA
GCTAAGCTTCGTGAAATTGAGCTAAAAGTTATGAAGTTTCAAGATGAATTGGAATCTGGAAAGAGACCTA
AAAAACCAGGCCAAAGCTTCCAGGAACAAGTAGAGCACTACAGGGATAAACTGCTGCAGCGGGAGAAGGA
AAAAGAATTAGAAAGAGAACGAGAAAGAGACAAAAAAGATAAAGAAAAATTGGAATCTCGATCCAAAGAC
AAGAAGGAAAAGGATGAATGTACTCCAACAAGAAAAGAAAGGAAGAGACGACATAGTACCTCCCCCAGCC
CTTCTCGAAGTAGCAGTGGTCGGCGTGTGAAATCCCCATCACCCAAATCAGAGCGCTCTGAACGGTCAGA
AAGGTCTCACAAAGAAAGTTCTCGGTCCAGATCCTCTCACAAAGACTCTCCTAGAGACGCTAGCAAAAAA
GCCAAAAGGTCGCCGTCTGGTTCAAGGACACCTAAAAGGTCTAGGCGCTCTCGCTCTAGGTCCCCTAAGA
AATCAGGGAAGAAATCCAGATCTCAGTCCCGGTCTCCACACAGGTCTCATAAAAAGTCAAAGAAAAACAA
ACACTGA

Translation (1028 aa):
MADKTPGGSQKASSKNRSSDVHSSGSSDAHMDASGPSDSDMPSRTRPKSPRKHNYRNESSRESLCDSPHQ
NLSRPLLENKLKAFSIGKMSTAKRTLSKKEQEELKKKEDEKAAAEIYEEFLAAFEGSDGNKVKTFVRGGV
VNAAKDEHETDEKRGKIYKPSSRFADQKNPPNQSSNERPPSLLVIETKKPPLKKGEKEKKKSNLELFKEE
LKQIQEERDERHKTKGRLSRFEPPQSDSDGQRRSMDVPSRRNRSSVLDDYAPGSHDVGDPSTTNLYLGNI
NPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLG
WGKAVPIPPHPIYIPPSMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPPPKNKEDFEKTLSQAIVKVVI
PTERNLLALIHRMIEFVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQGDSPTKWRT
EDFRMFKNGSFWRPPPLNPYLHGMSEEQETEAFVEEPSKKGALKEEQRDKLEEILRGLTPRKNDIGDAMV
FCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKFFETKLCQIFSDLN
ATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFLGLVNIIEEKETEDVPDDLDGAPIEE
ELDGAPLEDVDGIPIDATPIDDLDGVPIKSLDDDLDGVPLDATEDSKKNEPIFKVAPSKWEAVDESELEA
QAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPVREEATESKFSKYSEMSEEKR
AKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYRDKLLQREKEKELERERERDKKDKEKLESRSKD
KKEKDECTPTRKERKRRHSTSPSPSRSSSGRRVKSPSPKSERSERSERSHKESSRSRSSHKDSPRDASKK
AKRSPSGSRTPKRSRRSRSRSPKKSGKKSRSQSRSPHRSHKKSKKNKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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