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Report for CCDS90421.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90421.1 Public Mus musculus 8 Arhgap10 23 108 98 CCDS HistoryNCBI Gene:78514Re-query CCDS DB by CCDS ID:90421.1Re-query CCDS DB by GeneID:78514See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90421.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000210922.1 ENSMUSP00000147485.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210922.1Link to Ensembl Protein Viewer:ENSMUSP00000147485.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210922Re-query CCDS DB by Protein ID:ENSMUSP00000147485
Original member Current member NCBI NM_001363418.1 NP_001350347.1 Accepted alive Link to Nucleotide Sequence:NM_001363418.1Link to Protein Sequence:NP_001350347.1Re-query CCDS DB by Nucleotide ID:NM_001363418Re-query CCDS DB by Protein ID:NP_001350347Link to BLAST:NP_001350347.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350347.1 735 Q6Y5D8-3 735 100% 0 0

Chromosomal Locations for CCDS 90421.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 77250919 77251007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77257326 77257417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77277148 77277307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77310731 77310881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77344640 77344799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77346272 77346377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77351614 77351672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77358547 77358634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77365086 77365160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77382725 77382790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77384751 77384796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77388654 77388735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77409548 77409642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77411022 77411128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77413498 77413627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77420072 77420176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77420637 77420747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77426330 77426431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77432740 77432811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77450693 77450754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77450828 77450923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 77517630 77517783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2208 nt):
ATGGGGCTGCAGCCCCTGGAGTTTAGCGACTGCTACCTCGACAGCCCGTGGTTCCGGGAGAGGATCCGCG
CGCACGAAGCGGAGCTCGAGAGGACCAACAAGTTCATCAAAGAGCTCATCAAAGACGGCAAGAACCTCAT
CTCTGCCACCAAAAGTCTGTCAGCTGCCCAGAGGAAGTTCGCTCACTCGCTCAGAGACTTCAAGTTCGAG
TTTATCGGCGATGCTGAGACTGACGATGAACGGTGCATAGATGCCTCCTTACGGGAATTTTCTAACTTTC
TGAAGAATCTGGAAGAACAGAGAGAAATCATGGCATTAAGTGTGACTGAAACCCTGATTAAACCCTTGGA
GAAATTCAGAAAAGAGCAGCTTGGAGCTGTAAAGGAAGAAAAAAAGAAGTTTGACAAAGAGACGGAAAAG
AATTACAGTCTCATCGACAAGCACTTGACGCTGTCTGCCAGGAAGAAGGACTCACACTTGCAGGAGGCCG
ACCTCCAAGTGGAGCAGAACCGGCAGCATTTCTACGAGCTCTCGCTTGAATATGTGTGCAAGCTCCAGGA
AATCCAAGAAAGAAAGAAGTTCGAGTTTGTGGAGCCTATGCTGTCCTTCTTTCAGGGAATGTTCACTTTC
TATCATCAAGGCCACGAGCTTTCCAAAGACTTCAATCACTACAAGATGGAACTACAAATCAACATTCAGA
ATACACGGAATCGATTTGAGGGAACCAGATCAGAAGTGGAGGAACTTATGAATAAAATTAGACAAAATCC
CAAGGACCAGAAGCGAGCCAGCCAGTTCACAGCAGAAGGCTACCTGTACGTCCAGGAGAAAAGGCCTGCT
CCATTTGGGTCCAGTTGGGTCAAACACTACTGCATGTACCGGAAAACAGCCAAGAAATTCAACATGATTC
CATTTGAGCACAGATCTGGGGGGAAACTGGGGGATGGCGAGGCTTTCTTTTTGAAAGAATGCACCAAAAG
GCACATGGACTCCACGGACAGAAGGTTTTGCTTTGACATCGAAGCTGCTGACAGGCCTGGCGTCCCCTTG
ACCGTGCAGGCGTTTTCAGAAGAAGAGAGGAAGCAGTGGTTGGAAGCTCTGGGTGGAAAAGAAGCTCTGT
TCCACACGTTTAACAGAGCCATTGTCCCGAGACCGGAAGGAGGTGCACAGCTGGATAAGATGGGATTCAC
AATTCTCAGAAAATGCATCAGCGCCGTTGAAACCCGAGGTATAAATGACCAAGGACTGTACAGAGTTGTG
GGGGTGAGTTCAAAGGTCCAGAGACTTCTGAGTATGTTGATGGATGTAAAAATGTGCAATGAGCTGGACC
TGGAGAATTCTGCAGATTGGGAAGTGAAGACAGTAACAAGTGCCTTGAAGCAGTATCTGAGGAGTCTTCC
AGAGCCTCTCATGACCTATGAGTTACACAGAGACTTCATTGTTCCAGCCAAGAGCGGCAGCCCGGAATCC
CGAGTTAATGCCATCCACTTCTTGGTACACAAACTGCCAGAGAAGAATAAGGAGATGTTGGATATCTTGG
TGAAGCATCTAACCAACGTGTCAAGTCACTCGAAGCAGAATCTAATGACAGTGGCGAATTTAGGGGTGGT
GTTTGGACCAACTCTGATGAGACCACAGGAAGAGACTGTTGCCGCCATCATGGATTTGAAGTTTCAGAAT
ATCGTTGTAGAAATCTTAATTGAAAACCATGAAAAGATTTTTCGAACCTCGCCTGATACCACATTTGCTG
AGCCCACATGCCTGTCAGCATCACCCCCAAACGCTCCACCACGACAGTCCAAGAGACAAGGGCAGAGGAC
GAAGAGACCAGTGGCCGTGTACAACCTTTGTCTTGAGCTGGAGGAGGGTGACAGTCCCAGCCCTCTCAAG
GAGGACCCCCCCAGCAGCAGTCAGGACTCTCTCTCCACCCCATCTCCCACAACGTCAGCTGCCCATGGGC
CTCCTGGACTAGACGGAAACCACCTAGCAGCAGACGGAGGGAGCTGTGGAGATGCCACCGCCACCACCGT
TATCAATCGAAAGGCTCGGGCAGTGTACCCGTGTGAAGCAGAACACAGCTCGGAATTGTCATTTGAAATA
GGAGCCATTTTTGAGGATGTTCAGACCTCAAGGGAACCCGGATGGCTGGAAGGGACCCTGAACGGCAAGC
GAGGGCTGATTCCACAGAATTATGTCAAGCTCCTGTAG

Translation (735 aa):
MGLQPLEFSDCYLDSPWFRERIRAHEAELERTNKFIKELIKDGKNLISATKSLSAAQRKFAHSLRDFKFE
FIGDAETDDERCIDASLREFSNFLKNLEEQREIMALSVTETLIKPLEKFRKEQLGAVKEEKKKFDKETEK
NYSLIDKHLTLSARKKDSHLQEADLQVEQNRQHFYELSLEYVCKLQEIQERKKFEFVEPMLSFFQGMFTF
YHQGHELSKDFNHYKMELQINIQNTRNRFEGTRSEVEELMNKIRQNPKDQKRASQFTAEGYLYVQEKRPA
PFGSSWVKHYCMYRKTAKKFNMIPFEHRSGGKLGDGEAFFLKECTKRHMDSTDRRFCFDIEAADRPGVPL
TVQAFSEEERKQWLEALGGKEALFHTFNRAIVPRPEGGAQLDKMGFTILRKCISAVETRGINDQGLYRVV
GVSSKVQRLLSMLMDVKMCNELDLENSADWEVKTVTSALKQYLRSLPEPLMTYELHRDFIVPAKSGSPES
RVNAIHFLVHKLPEKNKEMLDILVKHLTNVSSHSKQNLMTVANLGVVFGPTLMRPQEETVAAIMDLKFQN
IVVEILIENHEKIFRTSPDTTFAEPTCLSASPPNAPPRQSKRQGQRTKRPVAVYNLCLELEEGDSPSPLK
EDPPSSSQDSLSTPSPTTSAAHGPPGLDGNHLAADGGSCGDATATTVINRKARAVYPCEAEHSSELSFEI
GAIFEDVQTSREPGWLEGTLNGKRGLIPQNYVKLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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