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Report for CCDS90394.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90394.1 Public Mus musculus 8 Snx25 23 108 98 CCDS HistoryNCBI Gene:102141Re-query CCDS DB by CCDS ID:90394.1Re-query CCDS DB by GeneID:102141See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90394.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110378.8 ENSMUSP00000106007.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110378.8Link to Ensembl Protein Viewer:ENSMUSP00000106007.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110378Re-query CCDS DB by Protein ID:ENSMUSP00000106007
Current member NCBI NM_001372342.1 NP_001359271.1 Accepted alive Link to Nucleotide Sequence:NM_001372342.1Link to Protein Sequence:NP_001359271.1Re-query CCDS DB by Nucleotide ID:NM_001372342Re-query CCDS DB by Protein ID:NP_001359271Link to BLAST:NP_001359271.1

Chromosomal Locations for CCDS 90394.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 46033742 46033822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46034402 46034502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46035538 46035719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46038455 46038521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46041317 46041434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46043968 46044132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46045186 46045299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46047291 46047431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46049366 46049497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46054319 46054480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46055848 46056123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46058467 46058598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46068056 46068237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46080222 46080292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46103515 46103701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46105119 46105291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46116182 46116398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46124062 46124146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 46151782 46152156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2961 nt):
ATGCACCGCGATGCCACCGACAGCAGCGGCGCCCGCCGCGGCCCCACGTCCGCCGCAGACGCCTGCCGCG
CTGCCCGGGGCTCCGCGGACCGGCCGCGGACGGCGGACGGCCCGGGCTGGGGCTGGCGGGGGCCCGCGGC
CGTGGCCGCCCTGGCAGTGCTGGCGCTGTGCTGCCTGGTCCCAGGCTGGGGACCGGCGGCGGGCACGGGG
CCGGGCGCCGTGCTGCTGCGCCTCAGCCTGTACCTGAGCTGCGCCGCGGCCGCCTTGCTGCTGGGGACAC
TGGTCTCGCTCGTCTGCTGGAGCCCGCGCGCCCAGCCGCCGGACTTCGTCTCTTCCTGGAGCCGGCTGGC
GGCGACCGTCCGCTGTCCGCTGCGGAGCCCTGTATATGGAAATCCACAGGAGACAGCTCAGGGCAGAAGA
GTGGTCATTTCTCACAACATGGATCGTGTTCTGAGAGATGTGTTCGACTACAGTTACAGAGACTATATTC
TCTCCTGGTACGGGAACCTCAGCAGAGATGACGGACAGCTCTACCATCTGCTCTTAGATGACTTCTGGGA
AATTGTCAAGCAGATTCGCCAGAGGCTGAGTCACGTGGATGTGGTTAAAGTTGTCTGTAATGATATTGTA
AAGGCTTTGCTCACTCACTTCTGTGACCTGAAGGCTGCTACTGCCAGACATGAAGAACAGCCAAGGCCTT
TTGTGTTGCATGCATGCTTGAAGGATTCACATGATGAAGTAAGATTCCTTCAAACATGTTCTCAGGTTCT
GGTGTTATGCCTTCTCCCTTCTAAGGATATCCAGTCTCTCAGCTTACGTACAATGCTCGCAGAAATTCTT
ACGACAAAAGTCTTGAAGCCAGTAGTGGAATTGCTGAGTAACCCTGACTACATTAACCAAATGCTGCTCA
GGCAGTTGGAGTACAGAGAGCAGATGAGTGAGCATCACAAGCGAGCCTACACGTACGCGCCTTCCTACGA
GGACTTTATCAAGCTCATCAACAGCAACTCTGATGTGGACTTCCTGAAGCAGCTCAGGTATCAAATTGTA
GTGGAGATAATCCAAGCAACTACAATCAGCAGCTTTCCCCAGCTGAAGAGACACAAGGGTAAGGAATCAG
CTGCCATGAAAACTGATCTCTTGAGGGCCAGGAACATGAAAAGGTACATTAACCAGCTGACTGTGGCAAA
GAAGCAGTGTGAGAAGAGAATCCGAATCCTGGGAGGTCCTGCCTATGACCAGCAAGAGGATGGAGCCTCG
GATGAAGGGGAAGGGCCTCAGAGCCAAAAGATTCTTCAGTTTGAAGATATTATGACCAATCCTTTCTACC
GAGAGCGCTTTGGAACATACATGGAACGGATAGACAAGCGGGCTCTAGTTGGCTTTTGGGAGTCTGCCGA
ACACCTGAAGAATGCTAACAAGAGTGAAATTCCACAATTAGTTAGTGAAATGTATCAGAATTTCTTCGTG
GAAAGCAAGGAAATCTCCGTGGAAAAGTCACTTTACAAAGAAATCCAGCAGTGTCTTGTGGGAAACAGAG
GCATCGAGGTGTTCAGCAAAATCCAAGCCGATGTGTCCGAGGTGCTGAGGGAGCGGTATTACCCCTCCTT
CCTCGTCAGCGACCTGTATGAGAAGCTCATGCGTGAGGAAGAAGAGGAGGAGCCTGACGCTCAGCTGGCC
TCTGAGAAGGATGAGCTGGGTTCAGGAGGTGAGGCTGGTGAGGAGGCTGTAGAAGGCACCAGTGGGGTCA
GTGATCCAGCCAGCTTTGCTGTAATCAAACTCCGAGAGCTAAATGAGAAACTTGAATACAAAAGGCAAGC
TCTAAGTTCTATTCAGAATGCACCAAAACCTGATAAGAAGATTATTTCCAAGTTGAAGGATGAAATACTT
CTGATAGAGAAAGAATGCACGGCTCTTCAGCTGCACATGGCGAGAACAGATTGGTGGTGTGAGAACCTGG
GCCTGTGGAGAGCATCCATCACCAGCGCAGAGGTGACAGAAGAGAATGGCGAGCAAATGCCTTGTTACTT
TGTCAGGGTAAATCTACAAGAAGTTGGAGGAGTTGAAACTAAGAACTGGACCGTCCCAAGAAGGCTCAGT
GAGTTTCAGAATTTACATCGGAAACTTAGTGAGTGTGTCCCTTCTTTAAAAAAAGTCCAGTTGCCTTCTC
TCAGTAAGCTGCCTTTCAAATCTATAGATCACAAGTTCCTGGGAAAGTCAAGAAATCAGTTAAATGCATT
TCTACAGAACCTGCTTTCAGATGAAAGACTGTTCCAGAGCGAAGCACTTTATGCCTTTTTGAGCCCTTCT
CCTGACTACCTCAAGGTCATTGATGTACAGGGGAAAAAGACCTCCTTCTCATTGTCTTCATTTCTGGAAA
AACTTCCTCGTGACTTCTTCTCCCATCAGGAGGAGGAGATAGAAGAGGACAGCGACCTGTCCGATTACGG
GGATGATGTGGACGGGAAGAAGGATTCCTTGGCTGAACCGTGTTTCATGCTGATCGGGGAGATTTTCGAA
CTTCGAGGAATGTTTAAATGGGTGCGAAGAACATTAATCGCTCTTGTTCAGGTCACGTTTGGAAGAACCA
TCAACAAGCAAATCCGCGACACGGTGAGCTGGATCTCCAGCGAGCAGATGCTGGTCTACTACATCAGTGC
TTTCCGGGATGCCTTTTGGCCAAACGGGAAACTGGCACCTCCAACAAGAATCCGAAGCGTGGCACAGAGT
CAGGAGACGAAGCAGAGAGCACAGCAGAAGCTGCTCGAGAACATTCCAGATACACTTCAGAGCCTTGTTG
GACAGCAAAATGCCCGCCATGGTATAATAAAAATATTCAAGGCGCTGCAAGAGACAAAGGCCAACAAACA
CCTGCTCTATGTGCTGATGGAGCTGCTGCTGACAGAGCTCTGCCCTGAGCTGAGGGCTCACCTGGATCAG
TTCAAAGCTGGCCAAGTCTGA

Translation (986 aa):
MHRDATDSSGARRGPTSAADACRAARGSADRPRTADGPGWGWRGPAAVAALAVLALCCLVPGWGPAAGTG
PGAVLLRLSLYLSCAAAALLLGTLVSLVCWSPRAQPPDFVSSWSRLAATVRCPLRSPVYGNPQETAQGRR
VVISHNMDRVLRDVFDYSYRDYILSWYGNLSRDDGQLYHLLLDDFWEIVKQIRQRLSHVDVVKVVCNDIV
KALLTHFCDLKAATARHEEQPRPFVLHACLKDSHDEVRFLQTCSQVLVLCLLPSKDIQSLSLRTMLAEIL
TTKVLKPVVELLSNPDYINQMLLRQLEYREQMSEHHKRAYTYAPSYEDFIKLINSNSDVDFLKQLRYQIV
VEIIQATTISSFPQLKRHKGKESAAMKTDLLRARNMKRYINQLTVAKKQCEKRIRILGGPAYDQQEDGAS
DEGEGPQSQKILQFEDIMTNPFYRERFGTYMERIDKRALVGFWESAEHLKNANKSEIPQLVSEMYQNFFV
ESKEISVEKSLYKEIQQCLVGNRGIEVFSKIQADVSEVLRERYYPSFLVSDLYEKLMREEEEEEPDAQLA
SEKDELGSGGEAGEEAVEGTSGVSDPASFAVIKLRELNEKLEYKRQALSSIQNAPKPDKKIISKLKDEIL
LIEKECTALQLHMARTDWWCENLGLWRASITSAEVTEENGEQMPCYFVRVNLQEVGGVETKNWTVPRRLS
EFQNLHRKLSECVPSLKKVQLPSLSKLPFKSIDHKFLGKSRNQLNAFLQNLLSDERLFQSEALYAFLSPS
PDYLKVIDVQGKKTSFSLSSFLEKLPRDFFSHQEEEIEEDSDLSDYGDDVDGKKDSLAEPCFMLIGEIFE
LRGMFKWVRRTLIALVQVTFGRTINKQIRDTVSWISSEQMLVYYISAFRDAFWPNGKLAPPTRIRSVAQS
QETKQRAQQKLLENIPDTLQSLVGQQNARHGIIKIFKALQETKANKHLLYVLMELLLTELCPELRAHLDQ
FKAGQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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