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Report for CCDS90393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90393.1 Public Mus musculus 8 Pdlim3 23 108 98 CCDS HistoryNCBI Gene:53318Re-query CCDS DB by CCDS ID:90393.1Re-query CCDS DB by GeneID:53318See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90393.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000210422.1 ENSMUSP00000148113.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210422.1Link to Ensembl Protein Viewer:ENSMUSP00000148113.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210422Re-query CCDS DB by Protein ID:ENSMUSP00000148113
NCBI NM_001374652.1 NP_001361581.1 Updated not alive Link to Nucleotide Sequence:NM_001374652.1Link to Protein Sequence:NP_001361581.1Re-query CCDS DB by Nucleotide ID:NM_001374652Re-query CCDS DB by Protein ID:NP_001361581
Current member NCBI NM_001374652.2 NP_001361581.1 Accepted alive Link to Nucleotide Sequence:NM_001374652.2Link to Protein Sequence:NP_001361581.1Re-query CCDS DB by Nucleotide ID:NM_001374652Re-query CCDS DB by Protein ID:NP_001361581Link to BLAST:NP_001361581.1

Chromosomal Locations for CCDS 90393.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 45885580 45885672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45896748 45896899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45900475 45900559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45909019 45909086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45913697 45913960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45915129 45915259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45917458 45917569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45918825 45919014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGCCCCAGAACGTAGTTCTCCCGGGTCCTGCGCCCTGGGGCTTCAGACTCTCTGGGGGCATAGACTTCA
ATCAGCCTTTGGTCATCACCAGGATCACTCCAGGAAGCAAAGCAGCAGCTGCCAACCTGTGTCCTGGAGA
TGTCATCCTAGCTATTGATGGCTTTGGTACGGAGTCTATGACTCATGCTGATGCACAGGACAGGATTAAA
GCAGCGTCCTACCAGTTGTGTCTCAAGATTGACAGGGCAGAAACTCGCTTATGGTCCCCGCAGGTGTCTG
AAGATGGAAAAGCACACCCCTTCAAAATCAACTTAGAAGCTGAACCACAGGATGTGAACTACTTTGAACA
CAAGCACAATATTCGGCCCAAACCTTTCATAATTCCAGGCCGAACCAGTGGCTGCAGCACTCCTTCCGGT
GTTGACTGTGGCAGTGGACGTAGCACCCCTTCTTCCGTCAGTACCGTTAGTACAATCTGCCCGGGTGACT
TGAAAGTTGCTGCTAAGATGGCCCCTAACATTCCTTTGGAAATGGAACTTCCGGGCGTGAAGATCGTACA
CGCTCAGTTTAACACGCCTATGCAGTTGTACTCAGATGACAATATTATGGAAACACTTCAGGGTCAGGTT
GCCACAGCTCTAGGGGAGACATCCTCCATGAGTGAACCCACAGCTTCAGTGCCCCCTCAGTCGGACGTGT
ACCGCATGCTCCATGACAACCGGGATGACCCAGCCGCTCCTCGCCAGTCGGGCTCCTTCAGGGTGCTGCA
GGATCTGGTGAATGACGGGCCTGATGACCGTCCGGCTGGAACTCGAAGCGTGAGGGCTCCGGTTACGAAA
GTCCACGGTGGGGCTGGCAGTGCCCAGAGGATGCCGCTCTGTGACAAGTGTGGGAGTGGTATTGTAGGTG
CTGTCGTCAAGGCCCGGGATAAGTACCGGCACCCCGAGTGCTTTGTGTGTGCCGACTGTAACCTCAACCT
CAAGCAGAAAGGCTACTTCTTCGTGGAGGGGGAGCTGTATTGTGAGACGCACGCGAGAGCCCGCACGAGG
CCCCCAGAGGGCTACGACACCGTCACTCTGTACCCCAAAGCTTAA

Translation (364 aa):
MPQNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIK
AASYQLCLKIDRAETRLWSPQVSEDGKAHPFKINLEAEPQDVNYFEHKHNIRPKPFIIPGRTSGCSTPSG
VDCGSGRSTPSSVSTVSTICPGDLKVAAKMAPNIPLEMELPGVKIVHAQFNTPMQLYSDDNIMETLQGQV
ATALGETSSMSEPTASVPPQSDVYRMLHDNRDDPAAPRQSGSFRVLQDLVNDGPDDRPAGTRSVRAPVTK
VHGGAGSAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTR
PPEGYDTVTLYPKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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