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Report for CCDS90380.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90380.1 Public Mus musculus 8 Rnf170 23 108 98 CCDS HistoryNCBI Gene:77733Re-query CCDS DB by CCDS ID:90380.1Re-query CCDS DB by GeneID:77733See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90380.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000153528.7 ENSMUSP00000118689.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000153528.7Link to Ensembl Protein Viewer:ENSMUSP00000118689.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000153528Re-query CCDS DB by Protein ID:ENSMUSP00000118689
Original member Current member NCBI NM_001357292.1 NP_001344221.1 Accepted alive Link to Nucleotide Sequence:NM_001357292.1Link to Protein Sequence:NP_001344221.1Re-query CCDS DB by Nucleotide ID:NM_001357292Re-query CCDS DB by Protein ID:NP_001344221Link to BLAST:NP_001344221.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344221.1 239 Q8CBG9-2 239 100% 0 0

Chromosomal Locations for CCDS 90380.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 26120484 26120563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 26125904 26125979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 26129047 26129155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 26135629 26135702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 26138980 26139090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 26140811 26141080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (720 nt):
ATGCAAAGATATTGGCGTTTCCAAGACAACAAGATACAAGATATATGCTTTGGAGTCCTAGGAGAATCTT
GGATTCAAAGAAATGTACAGCAGAACATCCATCCAGAAAACCAGGAGCTAGTCAGAGTGCTTCGAGAACA
ATTCCAAACAGAACAGGATGTCCCTGCTCCTGCCCGACAGCAGTTCTACACTGAAATGTACTGTCCAATC
TGCTTACATCAAGCCTCCTTTCCTGTTGAAACAAACTGTGGACATCTCTTTTGTGGTTCCTGCATAATTG
CATACTGGCGATACGGGTCCTGGCTTGGTGCAATCAGTTGTCCTATCTGTAGACAAACGGTAACTCTCCT
CCTAACAGTATTTGGTGAAGATGATCAATCTCAGGATGTTATAAGATTGCGTCAAGATGTTAATGATTAT
AACCGGAGATTCTCAGGGCAGCCTAGATCTATTATGGAAAGGATCATGGACCTCCCCACCTTGCTGAGAC
ATGCGTTCAGGGAAGTGTTCTCAGTTGGGGGCCTCTTCTGGATGTTCCGCATTAGGATAATGCTTTGTTT
GATGGGAGCTTTTTTCTATTTAATATCACCTCTAGATTTTGTACCTGAAGCCTTGTTTGGAATTCTGGGC
TTTCTAGATGATTTCTTTGTTATCTTTTTGTTGCTTATTTACATCTCCATTATGTATCGAGAAGTGATAA
CCCAAAGACTAACTAGGTGA

Translation (239 aa):
MQRYWRFQDNKIQDICFGVLGESWIQRNVQQNIHPENQELVRVLREQFQTEQDVPAPARQQFYTEMYCPI
CLHQASFPVETNCGHLFCGSCIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDDQSQDVIRLRQDVNDY
NRRFSGQPRSIMERIMDLPTLLRHAFREVFSVGGLFWMFRIRIMLCLMGAFFYLISPLDFVPEALFGILG
FLDDFFVIFLLLIYISIMYREVITQRLTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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