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Report for CCDS90188.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90188.1 Public Mus musculus 7 Hnrnpul1 23 108 98 CCDS HistoryNCBI Gene:232989Re-query CCDS DB by CCDS ID:90188.1Re-query CCDS DB by GeneID:232989See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90188.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043765.13 ENSMUSP00000037268.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043765.13Link to Ensembl Protein Viewer:ENSMUSP00000037268.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000043765Re-query CCDS DB by Protein ID:ENSMUSP00000037268
Original member Current member NCBI NM_001360789.1 NP_001347718.1 Accepted alive Link to Nucleotide Sequence:NM_001360789.1Link to Protein Sequence:NP_001347718.1Re-query CCDS DB by Nucleotide ID:NM_001360789Re-query CCDS DB by Protein ID:NP_001347718Link to BLAST:NP_001347718.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347718.1 759 Q8VDM6-2 759 100% 0 0

Chromosomal Locations for CCDS 90188.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 25722247 25722363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25722806 25722997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25724555 25724844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25725924 25726214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25726735 25726903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25733016 25733144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25733244 25733366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25734559 25734825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25740828 25740940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25742927 25743026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25745093 25745232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25746348 25746421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25748323 25748476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25750865 25750985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2280 nt):
ATGGACAATATTACCAGACAGAACCAATTCTACGAGACACCAGTCATCAAGCAAGAAAATGAGTCAAGCT
ATGATAGGAGACCACTAGACATGGAGCCACAGCAGCAAGTATATCACCCAGAATTGAAGACAGAAATGAA
GCAAGAAGCCCCACCCAGCTTCCTCCCCCCTGAAGCCTCACAGCTCAAGACAGACAGACCACAATTCCAG
AATCGAAAGAGGCCCTTTGAAGAGAATCGAGGCCGTGGGTACTTCGAGCACCGAGAGGATCGAAGGGGCC
GCTCTCCTCAGCCTCCTGCTGAAGAGGATGAAGATGACTTTGATGATACACTTGTGGCCATTGACACATA
TAACTGTGACCTGCACTTCAAAGTGGCCCGAGACCGGAGTAGTGGCTATCCATTGACGATTGAGGGCTTT
GCATACCTGTGGTCAGGAGCCCGTGCCAGCTATGGGGTCAGAAGAGGGCGTGTGTGTTTTGAAATGAAGA
TCAATGAGGAAATCTCCGTGAAGCATCTTCCATCTACAGAGCCCGACCCCCACGTTGTCCGTATTGGCTG
GTCCTTGGACTCTTGCAGCACTCAGCTAGGTGAAGAGCCTTTTTCCTATGGTTATGGAGGCACAGGGAAG
AAGTCTACCAATAGCCGCTTTGAAAACTACGGAGACAAATTTGCTGAGAACGATGTGATTGGCTGCTTTG
CGGACTTTGAATGTGGAAATGATGTGGAGCTTTCTTTTACCAAGAATGGCAAGTGGATGGGCATTGCCTT
CCGAATCCAGAAAGAGGCCTTAGGGGGTCAGGCCCTCTATCCTCATGTCCTGGTGAAGAATTGTGCTGTG
GAATTTAACTTTGGGCAGAGAGCGGAGCCCTACTGCTCTGTCCTCCCAGGGTTCACATTCATCCAGCACC
TCCCCCTCAGTGAGCGGATACGGGGCACCATTGGGCCAAAGAGCAAAGCAGAGTGTGAGATTCTGATGAT
GGTAGGCCTGCCTGCTGCTGGCAAGACCACGTGGGCCATCAAACACGCTGCCTCCAACCCTTCCAAGAAG
TACAACATTCTGGGTACCAATGCCATCATGGATAAGATGCGGGTGATGGGCCTGCGGAGGCAGCGGAACT
ATGCTGGTCGCTGGGATGTCCTGATCCAGCAGGCCACTCAGTGCCTCAACCGTCTTATTCAGATCGCTGC
CCGAAAGAAGCGAAACTATATCCTAGATCAGACCAATGTTTATGGGTCAGCCCAGAGACGGAAAATGAGA
CCGTTTGAAGGCTTCCAGCGGAAAGCTATTGTAATCTGTCCAACTGATGAGGACCTCAAAGACCGCACAG
TAAAGCGAACGGACGAAGAAGGGAAGGATGTCCCAGATCACGCAGTCTTAGAAATGAAAGCCAACTTCAC
TTTGCCTGATGTCGGGGACTTCCTGGATGAGGTTCTGTTCATTGAGCTCCAGCGGGAGGAGGCAGACAAG
CTGGTGAGGCAATACAACGAGGAAGGCCGGAAGGCCGGCCCGCCCCCTGAGAAGCGCTTTGACAGCAGAG
GCGGAGGCTTCCGAGGCCGTGGGGGCGGCGGCGGTTTCCAGCGGTATGACAACCGAGGCCCTCCTGGAGG
CAACCGAGGAGGCTTCCAGAACCGGGGAGGTGGTGGTGGCAGCGGTGGTGGAGGAGGCAACTACCGAGGA
GGTTTCAACCGCAGCGGAGGTGGTGGCTACAACCAAAACCGCTGGGGTAATAACAACAGGGATAACAACA
ACTCCAACAACCGAGGCAACTATAACCGGGCTCCTCAGCAACAGCCACCACCACAACAGCCACCGCCACC
ACAACCACCACCACAACAACCACCACCACCACCTAGCTATAGCCCTGCTCGGAACCCTCCGGGAGCCAGC
AGCTACAACAAAAACAGCAACATCCCTGGCTCCAGCGCCAATACCAGCACCCCTACAGTGAGCAGCTACA
CCCCTCCACAGCCGAGTTACAGCCAGCCACCCTACAACCAAGGAGGCTACACCCAGGGCTACACAGCCCC
ACCACCTCCACCTCCGCCACCACCTGCCTACAACTATGGGAGCTATGGCCCCTACAATCCTGCCCCCTAT
ACACCCCCACCACCCCCAACTGCCCAGACCTACCCTCAGCCCAGCTATAACCAGTATCAGCAGTATGCCC
AGCAGTGGAGCCAGTACTATCAGAACCAGAGCCAGTGGCCGCCATACTACGGGAACTACGACTATGGAGG
CTACTCGGGCAGCACACAGGGGGGCACAAGCACACAGTAG

Translation (759 aa):
MDNITRQNQFYETPVIKQENESSYDRRPLDMEPQQQVYHPELKTEMKQEAPPSFLPPEASQLKTDRPQFQ
NRKRPFEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGF
AYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGK
KSTNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAV
EFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTIGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKK
YNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMR
PFEGFQRKAIVICPTDEDLKDRTVKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADK
LVRQYNEEGRKAGPPPEKRFDSRGGGFRGRGGGGGFQRYDNRGPPGGNRGGFQNRGGGGGSGGGGGNYRG
GFNRSGGGGYNQNRWGNNNRDNNNSNNRGNYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGAS
SYNKNSNIPGSSANTSTPTVSSYTPPQPSYSQPPYNQGGYTQGYTAPPPPPPPPPAYNYGSYGPYNPAPY
TPPPPPTAQTYPQPSYNQYQQYAQQWSQYYQNQSQWPPYYGNYDYGGYSGSTQGGTSTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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