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Report for CCDS90172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90172.1 Public Mus musculus 7 Ercc2 23 108 98 CCDS HistoryNCBI Gene:13871Re-query CCDS DB by CCDS ID:90172.1Re-query CCDS DB by GeneID:13871See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90172.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108460.7 ENSMUSP00000104100.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108460.7Link to Ensembl Protein Viewer:ENSMUSP00000104100.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108460Re-query CCDS DB by Protein ID:ENSMUSP00000104100
Original member Current member NCBI NM_001363981.1 NP_001350910.1 Accepted alive Link to Nucleotide Sequence:NM_001363981.1Link to Protein Sequence:NP_001350910.1Re-query CCDS DB by Nucleotide ID:NM_001363981Re-query CCDS DB by Protein ID:NP_001350910Link to BLAST:NP_001350910.1

Chromosomal Locations for CCDS 90172.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19382055 19382059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19382279 19382378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19383944 19384021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19384302 19384415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19385623 19385739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19385830 19385946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19386707 19386830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19386932 19387028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19387113 19387246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19387329 19387497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19388140 19388258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19390107 19390176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19390249 19390318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19390399 19390500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19391527 19391590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19391965 19392086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19393249 19393341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19393433 19393505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19393630 19393700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19393776 19393919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19394039 19394182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19394352 19394444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2220 nt):
ATGAAGCTCAACGTGGACGGGCTGCTGGTCTACTTCCCGTACGACTACATCTACCCGGAGCAGTTCTCCT
ACATGCTGGAGCTCAAGCGCACGCTGGACGCCAAGGGTCATGGAGTCCTGGAGATGCCCTCGGGCACTGG
GAAGACAGTGTCCCTATTGGCCCTGATTGTGGCCTATCAGCGGGTCATAGAAGAGCTTCGTAAGCTACTC
AGCTTCTACGAGCAGCAGGAGGGCGAGAAGCTGCCGTTCTTAGGACTGGCTCTGAGCTCAAGAAAGAACC
TGTGCATTCATCCCGAGGTGACTCCACTGCGCTTTGGGAAGGATGTTGATGGGAAGTGTCACAGCCTAAC
GGCGTCGTATGTGCGGGCACAGTACCAGCAGGATGCCAGCCTGCCTCACTGCCGCTTCTATGAGGAATTT
GACATCCATGGACGCCAGATGCCGCTCCCTGCGGGCATCTACAACCTGGATGACCTGAAGGCCCTAGGGC
AGCGCCAGGGCTGGTGCCCCTACTTCCTGGCTCGATACTCGATCCTGCATGCCAACGTGGTGGTTTACAG
CTACCACTACCTCCTGGACCCCAAGATCGCAGACCTGGTATCCAAAGAGCTGGCTCGCAAGGCTGTTGTG
GTCTTCGATGAAGCTCACAACATCGACAATGTCTGCATTGACTCCATGAGTGTCAACCTCACCCGCAGGA
CTCTGGACCGTTGCCAGAGCAACTTAGACACCCTACAGAAGACCGTGCTCAGGATCAAGGAGACGGATGA
GCAGCGGCTGCGGGATGAGTACCGGCGCCTGGTGGAGGGCCTGCGGGAGGCCAGTGTGGCCCGGGAGACA
GATGCCCACCTGGCCAACCCTGTGCTGCCGGACGAGGTGCTGCAGGAGGCTGTGCCTGGCTCCATCCGTA
CGGCTGAGCACTTCCTGGGCTTTCTGCGGCGGCTGCTGGAGTATGTCAAGTGGCGTCTGCGCGTGCAGCA
TGTGGTGCAGGAGAGTCCACCTGCCTTTCTGAGCGGCCTGGCCCAGCGGGTGTGCATCCAGCGCAAGCCC
CTCAGGTTCTGTGCTGAACGCCTGCGCTCCCTGCTGCACACCCTGGAGATTGCCGACCTGGCCGACTTCT
CCCCGCTCACACTCCTTGCTAACTTCGCCACTCTCGTCAGCACTTACGCCAAGGGCTTCACCATTATCAT
TGAGCCCTTTGACGACAGGACCCCCACCATCGCCAACCCCGTTCTGCACTTCAGCTGTATGGACGCCTCC
TTGGCCATCAAGCCTGTGTTTGAGCGCTTCCAGTCTGTCATCATCACTTCTGGGACACTGTCCCCACTGG
ACATCTACCCCAAGATCCTGGACTTCCACCCTGTCACAATGGCAACCTTCACCATGACGCTGGCCCGAGT
CTGCCTCTGCCCGATGATCATTGGCCGTGGTAATGACCAGGTAGCAATCAGCTCCAAATTTGAGACCAGA
GAAGATATTGCTGTGATCCGAAACTATGGCAACCTCCTGCTGGAGATGTCCGCCGTGGTCCCAGATGGCA
TTGTGGCCTTCTTTACCAGCTACCAGTACATGGAAAGCACCGTGGCCTCCTGGTATGAGCAGGGCATCCT
TGAGAACATCCAGAGGAACAAACTGCTCTTCATTGAGACCCAGGATGGGGCTGAGACCAGTGTGGCCCTG
GAGAAGTACCAAGAGGCATGCGAGAATGGCCGTGGGGCCATTCTGCTCTCAGTGGCTCGGGGCAAAGTAT
CAGAAGGGATTGACTTTGTACACCACTACGGACGGGCTGTGATCATGTTTGGAGTTCCCTATGTCTATAC
CCAGAGCCGAATTCTCAAGGCCCGGCTAGAGTATCTGCGGGACCAGTTCCAGATCCGAGAGAACGACTTC
CTCACCTTTGATGCTATGCGCCATGCAGCCCAGTGTGTGGGTCGTGCCATCAGGGGCAAGACGGACTATG
GACTCATGGTCTTTGCTGACAAGCGGTTTGCTCGGGCGGACAAGCGTGGTAAGCTGCCTCGCTGGATCCA
GGAGCACCTGACCGACTCCAACCTCAACCTGACCGTGGATGAGGGTGTACAGGTCGCCAAGTACTTCCTG
CGGCAGATGGCGCAGCCCTTCCACCGGGAGGATCAGCTGGGCCTGTCGCTGCTCAGCCTGGAGCAGCTGC
AGTCAGAGGAGACACTACAGCGAATTGAGCAGATCGCACAGCAGCTCTGA

Translation (739 aa):
MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQRVIEELRKLL
SFYEQQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEF
DIHGRQMPLPAGIYNLDDLKALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVV
VFDEAHNIDNVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASVARET
DAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKP
LRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPVLHFSCMDAS
LAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMIIGRGNDQVAISSKFETR
EDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVAL
EKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDF
LTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDSNLNLTVDEGVQVAKYFL
RQMAQPFHREDQLGLSLLSLEQLQSEETLQRIEQIAQQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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