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Report for CCDS90043.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90043.1 Public Mus musculus 6 Krba1 23 108 98 CCDS HistoryNCBI Gene:77827Re-query CCDS DB by CCDS ID:90043.1Re-query CCDS DB by GeneID:77827See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90043.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031815.11 ENSMUSP00000031815.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031815.11Link to Ensembl Protein Viewer:ENSMUSP00000031815.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000031815Re-query CCDS DB by Protein ID:ENSMUSP00000031815
Original member Current member NCBI NM_001362145.1 NP_001349074.1 Accepted alive Link to Nucleotide Sequence:NM_001362145.1Link to Protein Sequence:NP_001349074.1Re-query CCDS DB by Nucleotide ID:NM_001362145Re-query CCDS DB by Protein ID:NP_001349074Link to BLAST:NP_001349074.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349074.1 1032 Q6NXZ1-2 1032 100% 0 0

Chromosomal Locations for CCDS 90043.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 48395686 48395887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48403378 48403497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48403991 48404140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48405234 48405389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48406300 48406431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48406834 48407007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48407673 48407822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48409170 48409343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48409718 48409894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48411642 48411794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48412274 48412426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48413078 48413272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48413363 48413503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48414056 48414151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48414490 48414600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48415576 48416390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3099 nt):
ATGCGAAGCGCCAGACCGACCCAGACGAGCCAACTCTGCGGTTCTCGGTGTAGCGAGTTCCCCGGCCCCG
CTTCCTGTCGTGCAGAACTGGGCCGCTGTCCCCGAGGGTCTCGAGGGTCTCGGTGCAGCCTCCAGCCAGA
GCCGCACCGGAAGCTGGGTGGGCCAGGGAGTCGCGAAGCTGAGTTCCGCCATGGCGCTCCAGGGACCTCT
GAGCTGCTTCCTCTCTCTGCTTTCCTGTCACCTGCAGAGGCTGGAGGAGCCACATCAGGAGAGAGCCACC
AGGATAAGGGACAAAAACCCCATTTGGAGCATAGTTCCCAGGGAGAGCAGCCTCAGCAGAGCCTACACCT
CACCGCATTAGTGCAGCTGGTGAAGGAGATTCCAGAGTTCTTGTTTGGAGAAGTGAAGGGTACTGAGGAC
TACTCCGAGAGTGGGAGCACCAGTCTGGATGGGGAGCAAACAAGCCCCGAGGTAGCTGTGGTTGTGGAAG
CTTGCCCTCCCCGAGGCCTGCTCAATTCTCTTCCGGAGAGCCCTGCAAGCCACCCCAGCCTGGCCACCAC
ACCCACAGGCAGCTCAACTTCCGGTGGCCCTCCTGGAGACTGGGCACACGGAAGCCCCTTACCTGCTAGA
ACTGATGATAAGCCATTATCTATAGAGAAGGAAGGTGTAGGAGCCTCGAGAGAGACCTCCATTCATTCCA
CTCAAAGCCTGGGCCAGAGCAAGAGTTACCTAAGACAGGAGCGAGGCAGCATGGGAACAGGAACCCTTCC
TGAGAACAGCCCATTGCAAGGCCTCATCAACTGTTTGAAGGAGATCCTTGTGCCCAGACCCCAGCACCGG
GGGACAGCCCCAGACTTGCCGCCTTCTCTCCCTGGCTTGAGTGTGTTGAAGCAGACGAGAGCTGAGGTAG
AGGCTGGGAGCCTGCCCTGCCCGGTGAAGACAGAGGCAGCATCCGGAGATTGTCCCCTTCAGGGCCTGCT
GAACTGTCTGAAGGAGATCCCAAAAGCTCCAGACCGACGTCCCAGCCCCTCAGGAGCATCAGACTTGCAG
CTGCAGGAGGACCCAGGGAAAAGACATTCTGGAGCCAGCAGGGCCTCAAGCTCACCCCTAGAAGCTCTGG
AGGCCTGTCTGAAGGGCATCCCTCCAGGTGGGTCATCACCTCTTCAGTCACTAGCCATCTCATGGTCCAG
AAGTCCTCAGCTAGGAGATGCCGGGTCTCAGAGGTTTGAGCTACAGCAACAAGGATCTCACAGTGAAGAA
GCTACAAGGGAGCCACTTCTGCCTCTGAGCTTGCAGGGCTACATGAGAGAAGGACCTGGGGTTCAACCCT
GTGGCTCCCAGGGTACCCCTACCAGCTTCTCCTCAGCCAGCAGCAGTGATGGGGATCTGGATTTCAGGAG
CCCCAGGAGCAGCCAGGGGCAACGGCTTGGGAAAGGCTATCTACCAGGAAACTCTCCACTCCAAGGCCTG
GAGAACTGCCTGAGAGAGATCCCTATTCCCAGGCCACAGGCTGCCTGGCCATGCTCCTCGGCTGTCAACA
GGGGATTGAAGAGAACAGAGCCCAGGAACTGGACTGGAGACAGAGAAGGACTGAGAGGTGAGGCCTCTGA
GCCACCCCACCTCAGACAGCGTCCTGGAGAAGTGCCCAGCAGGAGTCTGCATCAAGACAGTCCACAGACC
TGTACTTCCACCTGCCACCAAGTGACCACCAGGCCAGGAACATGGCAATGGCCACAAGAGGAGACAGCCA
CCATGCCCTCCCCTCTGCACCGCCTGGAGAACTCTCTGAGGGGGATCTTGCCTGTGAGGCCCTTGCGTTT
CACCTGCGTGACTGGCCCTGGCCCCAGTCCCAGCCCTTGCTCCAGCTCCAGCTTCAGCAGCTCTGATGGA
GAAGACCTAAGACCAGAGCCTGCATTTTGGCAGTCACCCCTCCAGCAGAAAGACCAGCCTCCCTCCTGTA
AGGACCCTGTTCGTCTGTGCCCTGTCTCTGGCGCATCTCCAAGAGTCAACAGCAATAGCTGTTCTGCGGA
AGACCGTGAGAGAACAGAGCCCAGGGACTGCAGCAGCCTCAGCGCAGGAAGAGCAGAAGAGAAGCCCCAC
CCACCCAGAAGAGAAGATGGTGCAGAGCGCACACGCCAGCCTGGGCCTGTCACCAATGCTGAAGGAAAAG
GAGCAGCAGCTGGCCACCCATCGCCTGCCCCTCAGCTGGAGGAAAAGCCTGAGCCCAAGGGTACTGAAGA
CTCCAGGGACCTGGAGCCTGGACATAGACCACCCAGTGCCGCAGCCAGGACCCAAGGGAAGCTGCTCTCT
GGAGACCCTCCGGAGTCACCTAGCAAGTCTCCCCTTCCCACAACTGTCTTGTCAAAATGGTCACCCACTT
CTCTTCAGCCACCATGCCCCTGTGGCAGGTCCTTGCAGCAGGAGCTGCATAACCTTGGTACTGCCCTCAC
GGACAAGCTAGACCGGCTTGCAGCAGCCTTGGCAGGCCTGACTCAGGAAGTTGCAACCATGAAGACCCAA
ATGGATCAACTGCGAAGGCACCCACGGAGCCTTGGCCCAAAAGGTCAGGGTTCCTGGCAGTTGGCCCTCC
CCCAGAGACCTCGCTGGGTCAACAGACTGGGCCACAGACATCTACCCTACTGGAGACAGAAGGGCCCCAC
CAGGCCCAGACCAAAGATTCTGCGGACCCAGGCAGAAGGCTGCAAGACTAGTGACCGCCCAGGACTCTCT
AGAGGGAAGGGCAGTTTGGTGCCTCAGCTGCCTCCAGAGGCTTCCTTGGTAGAATCTTCCAGGCCCACCT
GTAGTTCATCCCAGCAGATCTCCTCTACGCCTGGAGGCCACACTGTGCTGACTGCACACCCTCCTCTGGA
GCACACTGCATGCCACCAGAATCCCCTCTCCCCTTCAGTGCCTACTTCAGTGCAGGTCCCCCTTGTGGCC
TCACCTGCAACCAGTGCAGACACAGAACCTCCGGCTGCTAGAGTGGCAGCCATCAGCATTCCAAACCAGC
CCAAGGAACCTGACAGCCTGCTAGGGGAAGCCCTCAGCAGAGACCTCTGGGGAGGTGACCACCGGGACCC
AAGGTGGGGGGCCCATTAA

Translation (1032 aa):
MRSARPTQTSQLCGSRCSEFPGPASCRAELGRCPRGSRGSRCSLQPEPHRKLGGPGSREAEFRHGAPGTS
ELLPLSAFLSPAEAGGATSGESHQDKGQKPHLEHSSQGEQPQQSLHLTALVQLVKEIPEFLFGEVKGTED
YSESGSTSLDGEQTSPEVAVVVEACPPRGLLNSLPESPASHPSLATTPTGSSTSGGPPGDWAHGSPLPAR
TDDKPLSIEKEGVGASRETSIHSTQSLGQSKSYLRQERGSMGTGTLPENSPLQGLINCLKEILVPRPQHR
GTAPDLPPSLPGLSVLKQTRAEVEAGSLPCPVKTEAASGDCPLQGLLNCLKEIPKAPDRRPSPSGASDLQ
LQEDPGKRHSGASRASSSPLEALEACLKGIPPGGSSPLQSLAISWSRSPQLGDAGSQRFELQQQGSHSEE
ATREPLLPLSLQGYMREGPGVQPCGSQGTPTSFSSASSSDGDLDFRSPRSSQGQRLGKGYLPGNSPLQGL
ENCLREIPIPRPQAAWPCSSAVNRGLKRTEPRNWTGDREGLRGEASEPPHLRQRPGEVPSRSLHQDSPQT
CTSTCHQVTTRPGTWQWPQEETATMPSPLHRLENSLRGILPVRPLRFTCVTGPGPSPSPCSSSSFSSSDG
EDLRPEPAFWQSPLQQKDQPPSCKDPVRLCPVSGASPRVNSNSCSAEDRERTEPRDCSSLSAGRAEEKPH
PPRREDGAERTRQPGPVTNAEGKGAAAGHPSPAPQLEEKPEPKGTEDSRDLEPGHRPPSAAARTQGKLLS
GDPPESPSKSPLPTTVLSKWSPTSLQPPCPCGRSLQQELHNLGTALTDKLDRLAAALAGLTQEVATMKTQ
MDQLRRHPRSLGPKGQGSWQLALPQRPRWVNRLGHRHLPYWRQKGPTRPRPKILRTQAEGCKTSDRPGLS
RGKGSLVPQLPPEASLVESSRPTCSSSQQISSTPGGHTVLTAHPPLEHTACHQNPLSPSVPTSVQVPLVA
SPATSADTEPPAARVAAISIPNQPKEPDSLLGEALSRDLWGGDHRDPRWGAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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