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Report for CCDS90019.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90019.1 Public Mus musculus 5 Gm6370 23 108 98 CCDS HistoryNCBI Gene:622924Re-query CCDS DB by CCDS ID:90019.1Re-query CCDS DB by GeneID:622924See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90019.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000198912.1 ENSMUSP00000143740.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000198912.1Link to Ensembl Protein Viewer:ENSMUSP00000143740.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000198912Re-query CCDS DB by Protein ID:ENSMUSP00000143740
Current member NCBI NM_001374731.1 NP_001361660.1 Accepted alive Link to Nucleotide Sequence:NM_001374731.1Link to Protein Sequence:NP_001361660.1Re-query CCDS DB by Nucleotide ID:NM_001374731Re-query CCDS DB by Protein ID:NP_001361660Link to BLAST:NP_001361660.1

Chromosomal Locations for CCDS 90019.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 146491391 146491522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146491706 146491908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146492447 146492494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146493139 146493332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146493584 146493954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGTTCTCCTGTTTCCAGGGTTCCAGAGGCTCCGGCCACAAAAAAGCCAAGAGCGGTTTCCTTGTTCGCT
TTTGGAGACGTTTGATTCGCCCTCTGACACACTTCAGGCATGCTTCCCACAGTGAGCCCAAGGTCTGTTC
TCAAAATGAACAGGAGCCAGACTCTCTGCCCAAGCGCCCCCAGTTCAACTATGACAGCCAAGAATACGTG
GTACAAATGATCCACTACATTCCAGCTGCTATTCAGAAACGTGACCACATCTGTATCACCATATTTCTTG
GCGTCTACCGAACGTATGCCAGCACTTGGGAGGTGCTGGACCTGCTGATGAGAACGTATGCATCCTTCCG
GCCTGACTGTATAAAGGACCAGCAAACTAAGAGAGCCATATTCAGGTTTCTGTTCGGCTGGTTTAAGAAA
TACCCCCAGGATTTTTATGAGTCCCCAGACCTGGCTGTTGTGAGGCAGTTCATTGACTATGTGAAGCGCA
ATGTGCCTTCCTCAGATGTAGATAGAGCCAGGGAGCTGCTCTCCGTGCTGGAAGATCAGGAGGCAATAGA
GCTACAGATTGAGCAAGATTTTGCCACAGCTCCAGAGCCCTCAGAGCAGGATGCCTCTGGGAGGCAGGAG
ACTCTGGCTCCGAGGCCAGCTTCTGAGACAGAGCCACAGGGAGACAAGCAACACCGAGAGGATGCTGAGC
TTGTGAAAGGAGCAGTTCTGGATCCCTTTAAACCAAAAGCCACAATAGAGCTGCATCCGACTTTACATCA
AGCTGTGCCCACATCAGATGGTTCACTCTCACCTGTAGATGTTACTGCAGATGAGGCGACAGGTGTGGCT
GCAGATGTTGCTGCAGATGTTTCACCTGCCAGGCAATTATTTGTGTCTTACACTGTGCAGTTAGGTACAC
CAGATTTCATTTTCCCTCTGCCTGAGGTTGACATATAG

Translation (315 aa):
MFSCFQGSRGSGHKKAKSGFLVRFWRRLIRPLTHFRHASHSEPKVCSQNEQEPDSLPKRPQFNYDSQEYV
VQMIHYIPAAIQKRDHICITIFLGVYRTYASTWEVLDLLMRTYASFRPDCIKDQQTKRAIFRFLFGWFKK
YPQDFYESPDLAVVRQFIDYVKRNVPSSDVDRARELLSVLEDQEAIELQIEQDFATAPEPSEQDASGRQE
TLAPRPASETEPQGDKQHREDAELVKGAVLDPFKPKATIELHPTLHQAVPTSDGSLSPVDVTADEATGVA
ADVAADVSPARQLFVSYTVQLGTPDFIFPLPEVDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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