NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS89787.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89787.1 Public Mus musculus 4 Pde4b 23 108 98 CCDS HistoryNCBI Gene:18578Re-query CCDS DB by CCDS ID:89787.1Re-query CCDS DB by GeneID:18578See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89787.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106904.8 ENSMUSP00000102517.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106904.8Link to Ensembl Protein Viewer:ENSMUSP00000102517.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106904Re-query CCDS DB by Protein ID:ENSMUSP00000102517
NCBI NM_001374780.1 NP_001361709.1 Updated not alive Link to Nucleotide Sequence:NM_001374780.1Link to Protein Sequence:NP_001361709.1Re-query CCDS DB by Nucleotide ID:NM_001374780Re-query CCDS DB by Protein ID:NP_001361709
Current member NCBI NM_001374780.2 NP_001361709.1 Accepted alive Link to Nucleotide Sequence:NM_001374780.2Link to Protein Sequence:NP_001361709.1Re-query CCDS DB by Nucleotide ID:NM_001374780Re-query CCDS DB by Protein ID:NP_001361709Link to BLAST:NP_001361709.1

Chromosomal Locations for CCDS 89787.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 102421771 102421820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102487211 102487405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102497622 102497658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102497754 102497824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102505993 102506042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102570766 102570878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102590831 102590924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102595934 102596112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102597459 102597557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102597694 102597858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102599643 102599742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102601533 102601687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102601779 102601901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102602587 102602769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102604974 102605339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1980 nt):
ATGTTGCACGTGAACGACTTGCCTCCTCCCAGGAGACACTCCTGGATATGCTTTGATGTGGAAAATGGCC
CTTCTCCAGGTCGGAGCCCACTGGACCCTCAAGCCGGCTCTTCGTCGGGACTGGTACTTCATGCCGCCTT
TCCTGGGCACAGCCAGCGCAGGGAGTCGTTCCTCTACAGATCTGACAGCGACTATGACTTGTCACCAAAA
GCGATGTCCAGGAACTCATCACTTCCCAGTGAGCAACACGGCGATGACCTGATTGTCACTCCTTTTGCCC
AGGTTCTTGCCAGCTTGCGAAGTGTAAGAAACAACTTCACCCTGCTGACGAACCTTCATGGAGCGCCGAA
CAAGAGGTCACCAGCGGCTAGTCAGGCTCCAGTCTCCAGAGTCAGCCTGCAAGAAGAATCATATCAGAAA
CTAGCAATGGAGACGCTGGAGGAACTAGACTGGTGCCTAGACCAGCTAGAGACCATCCAGACCTACCGCT
CTGTCAGCGAGATGGCTTCAAACAAGTTCAAAAGGATGCTGAACCGGGAGCTGACACACCTCTCAGAGAT
GAGCAGATCAGGGAACCAGGTGTCTGAGTACATTTCAAACACGTTCTTAGACAAGCAGAACGATGTGGAA
ATCCCATCTCCCACGCAGAAGGACAGGGAGAAGAAGAAGAAGCAGCAGCTCATGACCCAGATAAGTGGAG
TGAAGAAACTGATGCACAGCTCAAGCCTGAACAACACAAGCATCTCACGCTTCGGAGTCAACACGGAAAA
TGAGGATCATCTAGCCAAGGAGCTGGAAGACCTGAACAAATGGGGCCTTAACATCTTCAATGTGGCTGGG
TACTCACATAATCGGCCCCTTACGTGCATCATGTATGCAATATTCCAGGAAAGAGACCTTCTGAAGACGT
TTAAAATCTCATCTGACACCTTTGTAACCTACATGATGACTTTAGAAGACCATTACCATTCTGATGTGGC
ATATCACAACAGCCTGCATGCTGCTGACGTGGCCCAGTCAACTCACGTTCTCCTTTCTACGCCGGCACTG
GATGCTGTCTTCACAGACCTGGAAATCCTGGCTGCCATTTTTGCAGCTGCCATCCATGATGTCGATCATC
CTGGAGTCTCCAATCAGTTTCTCATCAATACAAATTCTGAACTTGCTTTGATGTATAATGATGAATCTGT
TCTGGAAAACCATCACCTTGCTGTGGGATTCAAATTGCTACAAGAGGAACACTGCGACATCTTTCAGAAT
CTTACCAAGAAGCAACGCCAGACACTCAGGAAAATGGTGATTGACATGGTGTTGGCAACTGATATGTCCA
AACACATGAGCCTCCTGGCAGACCTTAAAACAATGGTAGAAACCAAGAAGGTGACAAGCTCCGGTGTTCT
CCTCCTGGACAACTATACTGACCGGATACAGGTTCTTCGCAACATGGTACACTGTGCAGACCTGAGCAAC
CCCACCAAGTCCTTGGAATTGTATCGGCAATGGACCGATCGTATCATGGAGGAGTTTTTCCAGCAGGGAG
ACAAAGAACGGGAGAGGGGAATGGAGATTAGCCCAATGTGTGATAAGCACACAGCTTCTGTGGAAAAATC
CCAGGTTGGTTTCATTGACTACATTGTCCATCCACTGTGGGAGACCTGGGCAGACCTGGTTCAACCGGAT
GCTCAAGATATTCTGGATACACTAGAAGATAACAGGAACTGGTACCAGAGTATGATACCCCAGAGCCCTT
CCCCGCCACTGGATGAGAGGAGCAGGGACTGCCAAGGCCTGATGGAGAAGTTTCAGTTTGAACTGACCCT
TGAGGAAGAGGATTCTGAGGGACCGGAAAAGGAGGGAGAAGGCCACAGCTATTTCAGCAGCACAAAGACG
CTTTGTGTGATTGATCCAGAGAACAGGGATTCTCTGGAAGAGACTGACATAGACATTGCAACAGAAGACA
AGTCTCCGATCGACACATAA

Translation (659 aa):
MLHVNDLPPPRRHSWICFDVENGPSPGRSPLDPQAGSSSGLVLHAAFPGHSQRRESFLYRSDSDYDLSPK
AMSRNSSLPSEQHGDDLIVTPFAQVLASLRSVRNNFTLLTNLHGAPNKRSPAASQAPVSRVSLQEESYQK
LAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQVSEYISNTFLDKQNDVE
IPSPTQKDREKKKKQQLMTQISGVKKLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAG
YSHNRPLTCIMYAIFQERDLLKTFKISSDTFVTYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPAL
DAVFTDLEILAAIFAAAIHDVDHPGVSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEEHCDIFQN
LTKKQRQTLRKMVIDMVLATDMSKHMSLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSN
PTKSLELYRQWTDRIMEEFFQQGDKERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETWADLVQPD
AQDILDTLEDNRNWYQSMIPQSPSPPLDERSRDCQGLMEKFQFELTLEEEDSEGPEKEGEGHSYFSSTKT
LCVIDPENRDSLEETDIDIATEDKSPIDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH