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Report for CCDS89738.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89738.1 Public Mus musculus 4 Tmem8b 23 108 98 CCDS HistoryNCBI Gene:242409Re-query CCDS DB by CCDS ID:89738.1Re-query CCDS DB by GeneID:242409See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89738.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107866.8 ENSMUSP00000103498.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107866.8Link to Ensembl Protein Viewer:ENSMUSP00000103498.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107866Re-query CCDS DB by Protein ID:ENSMUSP00000103498
Original member Current member NCBI NM_001368840.1 NP_001355769.1 Accepted alive Link to Nucleotide Sequence:NM_001368840.1Link to Protein Sequence:NP_001355769.1Re-query CCDS DB by Nucleotide ID:NM_001368840Re-query CCDS DB by Protein ID:NP_001355769Link to BLAST:NP_001355769.1

Chromosomal Locations for CCDS 89738.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 43669506 43670034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43673900 43674089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43674437 43674644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43680659 43680792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43681046 43681314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43681959 43682284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43685297 43685390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43685526 43685649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43685728 43685870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43686011 43686189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43689427 43689573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43689691 43689807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43690027 43690362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2796 nt):
ATGGCCCAGCCCTTGTCCCGGCCCCTCATCCTATCCCAATTTCAGCCTTGGCCTCCGGCCACGCCCTCGC
CCCGCTTCCCAAACCTGTCCAGGCCCCGGCCGGTGTCCCAGCGAATGTCCAGGTCCAGGTCCCCGCTTCA
ACCCCGGTCCCTGCCCCCAGCCTGGCCGCTATCTCCGCCTCGGCCCTTGTTCCACCCCTTGTCACAATTC
CCAGCCCAGCATCTGACCCTGTCCCATTCCCCGCGTTTGCTTAAGCCCCTGGCCCAGCCACAGCCCTTGC
TTCAATCTCCATCACACCCACTCCTTCCATCACACCTTCTGCCCTTGTTTGAGCCCCGGTGCTCAGTTCA
GCGCCACCCAAAAAAAGCCCAGTCTTTGCCCCCATCTCTATGTTTGCCCAAGTCTCTTCCACTGGGTCCC
CGCCTCTCTCATACTCTACCCCTCTCCCAGCCTCGACTCAGGTCTGGGCTCCAGCTGCCACCAGCCCTAT
TGCTGCTGTTGCTGTTTTCTGTCCTTGGTCCAGGGGCTGGAGGCCTGTTCCTGACTGATTACTCCACCTG
CTCGCCCCGCAAGCTCAGCCCCTTTCGCTCCTTTGCCAGTACGGAGCTCTTCCACTTCCACGTTCCTGAG
GACACGTTCCTGGCTGTTTGGAACCTCATCATCTTCAAGGAGCAGGGAGGAACCTTTGGGGACCACTGCC
CAGACCAAAGCGTGACTGTGTATTTCCGCTCTGGAGCACCTCCCGTCATCAATCCGCTGCACACACACTT
CCCAGCAGACACGGCTGTGCCTGGGGTTTTCTCACTGACCCTCAGCTGGACACTGCCCAACAGAACCTCA
GGCATCTTCAACGTTAGCAGCCCCTTACCTGGGGACTGGTTCTTGGCTGCCCACCTTCCCCAAGCCCATG
GCCACATCTCTGTCAAGGGTCTCCAGGATGAATGTCAGTACCTGCTTCAGCCACAACTGATTGTCCGACG
ACTGCTGGATGTGGCTGTACTGGTTCCTGGCCGTCCCTCAGAGCAAACCCTTTCCTCCCATAATCGTTCA
GCCTTGTACAAGGTCTTTGTGCCAAGCTTCACCTACAGGGTTTCAGCCCAGCTGGTGTGTGTAGGGGGTC
GAGGGGCATCTGTCTGTCCCCTGACACTGCGCCTACGTCCCAAGGCTCCACCCCTACACAACTCAAGCTC
TGTGGCCTGTGGAGGTGCCTCAGTATGCCAGCTGGAGTTGGCCTTGCCCCCCTGGGGCCACTGGGTCTAT
GTGCGTGTGGAGACGCCATCCCGTGGTCCTGGCAGGACCATCAGCTTCCAGCTCTGTGTGCGGTTACAAG
AGTGTCCACAACCCAGCCTGTCCCGTGCCTTGGTCCCTGGGGCTGCCATGAACATGCCCCAGTCACTAGG
CACCCAGCCACTGCCTCCGGAGCCACCATCCCTGGGGACTCCTATAGAAGGGTCTGGAGCCATAGCACCC
ACTGAGCACTGCTGGCCAGTGCGTCCGACTCTGCGCAATGAGCTGGATACCTTCTCTGTCCACTTCTACA
TCTTTTTTGGTCCCAGCGTGGCCCTTCCACCTGAGCGCCCAGCTGTATTTGCCCTGAGGCTGTTGCCGGT
GCTGGACAGCGGGGGCGTCCTTAGCCTGGAGCTCCAGCTCAATGCGAGCTCTCTGCGCCAGGAAAATGTA
ACAGTATTCGGATGCCTGACTCATGAGGTGCCCTTGAGCCTGGGGGATGCTGCTGTGACCTGTTCCAAAG
AGTCCCTGGCAGGCTTCCTTCTCTCGGTCAGTGCCACCTCCAGAGTGGCCAGGCTTCGAATCCCATTCCC
ACAGACGGGGACCTGGTTCCTGACCCTCCGTTCTCTGTGCGGGGTGGGACCTCGGTTTGTGCGGTGCCGC
AATGCAACGGCAGAAGTGCGGCTGCGTACCTTCTTGTCCCCATGTGTGGATGACTGTGGGCCCTATGGCC
AGTGCAAACTGCTGCGCACCCACAACTACCTGTACGCGGCCTGCGAGTGCAAGGCTGGGTGGCGGGGCTG
GGGTTGCACAGACAGTGCCGACGCGCTCACCTATGGATTCCAGCTGCTGTCCACACTCCTCCTCTGCCTG
AGCAACCTCATGTTTTTGCCACCTGTGGTCCTGGCCATTCGGAGCCGATACGTGCTGGAAGCTGCCGTCT
ACACCTTCACCATGTTCTTCTCCACGTTCTATCATGCCTGTGACCAGCCAGGCATTGTGGTTTTCTGTAT
CATGGACTATGATGTACTTCAGTTCTGTGATTTCCTGGGCTCCTTAATGTCCGTGTGGGTCACCGTCATA
GCCATGGCTCGTCTGCAGCCTGTGATCAAGCAGGTGCTGTATCTGCTCGGGGCTATGCTGCTGTCTATGG
CTCTGCAGCTTGACCGGCATGGACTCTGGAATCTGCTGGGACCCAGTCTCTTTGCCCTCGGGATCTTGGC
CACAGCTTGGACAGTTCGCAGCGTCCGGCGCCGGCACTGTTACCCACCGACATGGCGCCGCTGGCTTTTC
TACCTGTGTCCCGGCAGCCTGATTGCTGGCAGTGCCGTTCTACTGTATGCTTTCGTGGAGACTCGGGACA
ACTACTTCTACATTCACAGCATTTGGCACATGCTCATTGCTGGCAGTGTGGGCTTCCTGCTGCCTCCCCG
TGCCAAGACTGACCGCCGGGTCCCTTCTGGAGCCCGGGCCAGGGGCTGCGGTTACCAGCTGTGCATCAAT
GAACAGGAGGAGCTGGGACTTGTGGGCCCAGGAGGGACCACTGTCAGCAGCATCTGTGTCAGCTGA

Translation (931 aa):
MAQPLSRPLILSQFQPWPPATPSPRFPNLSRPRPVSQRMSRSRSPLQPRSLPPAWPLSPPRPLFHPLSQF
PAQHLTLSHSPRLLKPLAQPQPLLQSPSHPLLPSHLLPLFEPRCSVQRHPKKAQSLPPSLCLPKSLPLGP
RLSHTLPLSQPRLRSGLQLPPALLLLLLFSVLGPGAGGLFLTDYSTCSPRKLSPFRSFASTELFHFHVPE
DTFLAVWNLIIFKEQGGTFGDHCPDQSVTVYFRSGAPPVINPLHTHFPADTAVPGVFSLTLSWTLPNRTS
GIFNVSSPLPGDWFLAAHLPQAHGHISVKGLQDECQYLLQPQLIVRRLLDVAVLVPGRPSEQTLSSHNRS
ALYKVFVPSFTYRVSAQLVCVGGRGASVCPLTLRLRPKAPPLHNSSSVACGGASVCQLELALPPWGHWVY
VRVETPSRGPGRTISFQLCVRLQECPQPSLSRALVPGAAMNMPQSLGTQPLPPEPPSLGTPIEGSGAIAP
TEHCWPVRPTLRNELDTFSVHFYIFFGPSVALPPERPAVFALRLLPVLDSGGVLSLELQLNASSLRQENV
TVFGCLTHEVPLSLGDAAVTCSKESLAGFLLSVSATSRVARLRIPFPQTGTWFLTLRSLCGVGPRFVRCR
NATAEVRLRTFLSPCVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLCL
SNLMFLPPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFLGSLMSVWVTVI
AMARLQPVIKQVLYLLGAMLLSMALQLDRHGLWNLLGPSLFALGILATAWTVRSVRRRHCYPPTWRRWLF
YLCPGSLIAGSAVLLYAFVETRDNYFYIHSIWHMLIAGSVGFLLPPRAKTDRRVPSGARARGCGYQLCIN
EQEELGLVGPGGTTVSSICVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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