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Report for CCDS89589.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89589.1 Public Mus musculus 2 Cass4 23 108 98 CCDS HistoryNCBI Gene:320664Re-query CCDS DB by CCDS ID:89589.1Re-query CCDS DB by GeneID:320664See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89589.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000228775.1 ENSMUSP00000154073.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228775.1Link to Ensembl Protein Viewer:ENSMUSP00000154073.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228775Re-query CCDS DB by Protein ID:ENSMUSP00000154073
Original member NCBI NM_001276422.1 NP_001263351.1 Updated not alive Link to Nucleotide Sequence:NM_001276422.1Link to Protein Sequence:NP_001263351.1Re-query CCDS DB by Nucleotide ID:NM_001276422Re-query CCDS DB by Protein ID:NP_001263351
NCBI NM_001276422.2 NP_001263351.1 Updated not alive Link to Nucleotide Sequence:NM_001276422.2Link to Protein Sequence:NP_001263351.1Re-query CCDS DB by Nucleotide ID:NM_001276422Re-query CCDS DB by Protein ID:NP_001263351
Current member NCBI NM_001276422.3 NP_001263351.1 Accepted alive Link to Nucleotide Sequence:NM_001276422.3Link to Protein Sequence:NP_001263351.1Re-query CCDS DB by Nucleotide ID:NM_001276422Re-query CCDS DB by Protein ID:NP_001263351Link to BLAST:NP_001263351.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263351.1 780 Q08EC4-2 780 100% 0 0

Chromosomal Locations for CCDS 89589.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 172393970 172394005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172416120 172416542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172423599 172423700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172424600 172424680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172426636 172427925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172432233 172432643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2343 nt):
ATGAGAGGCACCAGCATCAGAGAGGGTGCGCCCAAGACCCTGTTGGCCAGGGCACTCTACGACAACCATG
CTGATTGCTCCGACGAGCTTGCTTTCTCCAGAGGGGACATCCTGACCATCGTGGAACAAAATGTGCCAGA
AAGCGAGGGCTGGTGGAGGTGTCTGCTCCACGGGAGGCAAGGCCTGGCTCCAGCCAACCGCCTCCAAGTC
CTCAGAGAGACCCCTGCAGACAGACCCTGTCCCCTGCTCCCGAGAGGCCCAGACACAGATCTCACCAGCT
CCGGGGCGCCTTACCAGGTGCAGGACTTGATCTCCCCGCCACCCCAGGGACCTGTGTATGAACCAATGAG
GAGCTGGGTGGAGGGGCCGTCACCAGCGACTGCCCAAGTCTACGAATTGCCTGAGTCACCTTCCAGTGCC
AGGATCATCTGTGAAAAGACGCTGAGCTTCCCCAAGCAGGCCCTCTCTGTGCTTCCCAGACCGACGAGGG
CCTCGTTGCCGACACTTCCTTCCCAGGTGTATGACGTGCCTGTCCAGAGGCAGGGCTTCTCAACCCTTGA
GAGGCTGGAGAAGCAGCAGTTCTATGACATACCCACCAGCTCCCAGAAGGCTCTGCTCCACTCCTCCACC
AGCCAGGCAAGTGGACGGGATGTTACATTGGCACCGACAATGGCCTTCAGACAAGGTGGTGGCTATAACC
CGTTATCCAGCCCTCAGAAGTCAGAACGGATTCATGACACTCCGGTGTTGCTGGAAAAGGCCGATGTCAG
AAATGTGTCTATGACCAGCTTCACCAAAGACTCAGGTTCCAGAGCCATTCCAGGCTCCTCTGCTGTCCAC
ACTGGAGCTGTGGCCCTCTCCCCACAGCTGGGGAACACTGTGCAGAGAAAAAACAGCCTCCCAGAAGAAC
CTACCTATGCCTTCCCAACGTCCAGGGACCCACTGCCCTCTGATGCAGGTGGCAGCTACAAGGTCCCTTC
CAGGTTTCTTATTCCCAGAGTGGAGCAACAGAACACCATGCCTAACATTTATGACACCCCTAAAGCCATG
CAGGGTGTGTCTCATAACGCCCCTAAAGCCATGCAGGGTGTGTCTCTGGCTGGAAAGGAGCTGGAGAGAG
GCAGAGAGGCTCCAGAAAATTCCCCCTGGATCTCCGGACAGACAAGTTTCCTGTCTCCTGACTCGGACCG
ATTATCTGTTGCCAGCTCAGACAGCAGGGCTAGTGTGGTGTCTTCCTGCTCCTCCATATCCATGGACTCC
TCCTCTGGCTCCTCCTCAGAGGACTCCGTCAAGGAGCTATGGATGGACGTGGACTTTGCAAAGGAGACAG
CAGTGTCTCTGCAACACAAAGTGGCCAGCTCGGCGGCGGGCCTGCTGCTCTTTGTAAGCAGGACTTGGAG
GTTCAAAGACTCCTTGGAAACCAACATCCACAGAATCCGCAGGGCCGCTGACCACGTAGAGGAATCTGTA
AGAGAATTTCTGGATTTTGCCCAAGGGGTTGGTGGGACCGCTTGCAATCTCACAGACAGCTACCTTCAGG
CTAGAATTAGAGATCAGCTCCAGACAATCTCTAGCTCCTACCAGACACTGCTGGATGCCAAGGGAAGCTT
GGACCGCTGCAATTGGTCCCTGGAAGTTCTTGTGACAGACAAAGTCCAAAACAGCCTGGATGACCTGGAG
AGGTTTGTCGCCACTGCACGAATAGTTCCAGAAGACGTCAAGAGGTTTACCTCCATCGTCATTGCCAATG
GGAAGCTCCTTTTTAAACAGAACTGTGAGAAAGGAGAGATGGACTTGAAGTGTGAGAGATGCATCCGGCC
TCCCCAAAGAGAAACTGAGTCCTACCAAGAGAGCAGCCCCTTCGACAGGCAACCGACAACTGAACACTCC
TTTGAACTAGCAAGGAAAAACAGAGTGAATGTCTGTTGGCAGAGTCCTCCCCCTCTTACCTCTCCATCTC
CCAGTGGGCAAAACACCGAGAGGAAGATCCACCTGTCTAAGCATAGCAGACTCTATTTCGGAGCACTCTT
CAAAGCCATCAGTGTCTTTGCAAGCAGCCTCAGCAACGGCCAGCCCCCCGAGGTCTTCATCACTCAGAGC
AAGCTAGTCATCACAGTTGGACAGAAGCTGGTGGACACGCTGTGCAGTGAGACCCAGGAGAAAGATGAAC
GCAATGAGATCCTGTGTGGCAGCAGTCACCTCTGCGGGCTGCTCAAGGACCTGGCGCTGGCCACCAAAAG
TGCAGTGATCCAGTACCCGAGCCCCAGTGCCCTGAGCCTCCTCCAGTCAGAGGTGGAGAGGCTAGAGCAC
CACTCTCGGAAATTCAGAGACACGTTGGAATGA

Translation (780 aa):
MRGTSIREGAPKTLLARALYDNHADCSDELAFSRGDILTIVEQNVPESEGWWRCLLHGRQGLAPANRLQV
LRETPADRPCPLLPRGPDTDLTSSGAPYQVQDLISPPPQGPVYEPMRSWVEGPSPATAQVYELPESPSSA
RIICEKTLSFPKQALSVLPRPTRASLPTLPSQVYDVPVQRQGFSTLERLEKQQFYDIPTSSQKALLHSST
SQASGRDVTLAPTMAFRQGGGYNPLSSPQKSERIHDTPVLLEKADVRNVSMTSFTKDSGSRAIPGSSAVH
TGAVALSPQLGNTVQRKNSLPEEPTYAFPTSRDPLPSDAGGSYKVPSRFLIPRVEQQNTMPNIYDTPKAM
QGVSHNAPKAMQGVSLAGKELERGREAPENSPWISGQTSFLSPDSDRLSVASSDSRASVVSSCSSISMDS
SSGSSSEDSVKELWMDVDFAKETAVSLQHKVASSAAGLLLFVSRTWRFKDSLETNIHRIRRAADHVEESV
REFLDFAQGVGGTACNLTDSYLQARIRDQLQTISSSYQTLLDAKGSLDRCNWSLEVLVTDKVQNSLDDLE
RFVATARIVPEDVKRFTSIVIANGKLLFKQNCEKGEMDLKCERCIRPPQRETESYQESSPFDRQPTTEHS
FELARKNRVNVCWQSPPPLTSPSPSGQNTERKIHLSKHSRLYFGALFKAISVFASSLSNGQPPEVFITQS
KLVITVGQKLVDTLCSETQEKDERNEILCGSSHLCGLLKDLALATKSAVIQYPSPSALSLLQSEVERLEH
HSRKFRDTLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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