NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS89540.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89540.1 Public Mus musculus 2 Knl1 23 108 98 CCDS HistoryNCBI Gene:76464Re-query CCDS DB by CCDS ID:89540.1Re-query CCDS DB by GeneID:76464See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89540.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028799.11 ENSMUSP00000028799.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028799.11Link to Ensembl Protein Viewer:ENSMUSP00000028799.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000028799Re-query CCDS DB by Protein ID:ENSMUSP00000028799
Original member Current member NCBI NM_001362732.1 NP_001349661.1 Accepted alive Link to Nucleotide Sequence:NM_001362732.1Link to Protein Sequence:NP_001349661.1Re-query CCDS DB by Nucleotide ID:NM_001362732Re-query CCDS DB by Protein ID:NP_001349661Link to BLAST:NP_001349661.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349661.1 1612 Q66JQ7-1 1612 100% 0 0

Chromosomal Locations for CCDS 89540.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 119057297 119057331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119058355 119058394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119059544 119059603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119062360 119062421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119064045 119064097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119065949 119066001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119068123 119072658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4839 nt):
ATGGATGGGGTATATTCAGAAGCTAATGAAGAGAATGACAATACACAGAGACCTGTTAGAAGACAGCATT
CCTCAATTTTGAAACCCCCAAGGAGTCCTCTTCAGGACCTCAAATGTGGAAATCAAACAAACCAGGAACC
TAATCCTCCAAGAAAAAGGAAAAGCTCTCGTCGAGTCAGCTTTGCAGATACTATAAAAGTATTCCAGACA
GAGTCTCACATGAAAACAGAGAGAAATTCAGAAATTTCAGGTATGAACACTTTGCTTTGTGCTCCAATTC
AGACTCAGATGCAACAAAAGGAGTTCTCAATTACAGACTGCAACCATGAAAGGAAACATGCAAATGATCA
GACAGTCATCTTTTCAGATGAAAACCAGATGGATCTGACAGCAAGTCACACTGTAATGATTACCAAAGGT
CTTTCAGACTGTACCAAAAATGAAAATTCTACAAAAATAGATACCACGTCCTTTCTGGAGAATTTAAAGC
ATCATGCTGCAAATTCAAGAATTAAAAAGGATTTAGCATGTTCCACAGTTTCCTTAAGTCAAAACATTTT
CTCAGAAAAGATCAATTCTGACAACTTCATAAAAAGATTGAAGACAGGAAAACATATTTCGTCTTCTACA
GAGCTTGATAAGGAAAATGCTGAGATACCTGTTTATTCCAAAGACTCAAACAGTGCCTCTTCAACATATC
AAATGCATGCATCTCTTGGTGTAGATGAAAATAGTAGTAATAGGACTAGAATCTTTAGAGAACAAGATGA
TGGTATGAATTTGACCCAATGTCATACAGCCTGTATTAAGACTTGGATTCCTCCATCCACGGAGGCCAAA
ATAGGAGAATTCAAAGGTGATAAAACAATTTATGGCAATGAGTGTATGGAGTTGACAACTAACTATACGA
TACAGGTTTTGTCATCAGAAAATAATTTATCTGAAAGAGAAACTCAAACTCAAAATGGTATGAATGTTAC
AACAGTTGATGGAGCTACAGCTCCAGCTCCAGAGAAGAAAACAGCCCTTAAGGATAAACTAAATGCTGCT
TTTCAAGGCTCTTTCCCAAACCCTGAAAATAAAATTCATATTATCAAATGTCATCCTATAGAGTCAGAAA
CTCATACAGTCACACAGATTTCTAGTCAAAGTGCCAGCACATTGGCTGTAACTTCAAAATCTATATGTTC
TAGTCCAGCTATTGAGGGGTATAAGACAATTTTTCATTCTAGTAGCAATGATGCAATGGAACTGACTAAG
TGTCTATCAGCTATGGAAGAGGAAAAAAAATTGCTGAAGGCTGATGATAAGTATTCTAAAATATGTACCA
ATCCAGATGCTGGCCCACTCAGAGAGAAAACTATTTATTTAGAAGAGGATAGCATGGACATTACCAAAAG
TCACACCGTTGCAATAGATAATAAAATATTTAAACATGATCAAGAAAACATTAAAAAAGAAATAATAGCC
ATACCAATATTTGAAAAGGAAATGGTGCTCCGAAATCTTATGCCTATGTCAAAAGATGAGAAAAGGGATG
TAAATTATATTTCAGTTCCTCAAGTATCTAAGGAAAGCTTACAACGGAGTCAGACAAACACTTTATCTGT
TTCATTGACTGACAAAAAGATGGAATTCTTGGCAGATGAAGATATGGATCTGACTAAAAGTCACACAACT
AAGTTAAGTCAAGTTATTCCTACAACTTTTGACTTAGCATCAAAGAATGTCACCAAATCATACTCTCACA
GCAAAAGCCCTTTAAATGAGTGGGAAAGCCTGGATAAACAAGTAGTGCTAGGCCAGCATTCTAAACTTCC
TTTACCACAGAGGAAAGATAGAGATGATCCTGACTGTTCTCATCATAAGATAATGTATTCAGAGGAGTTA
CAAACTATGGATCTAACCAAGAGCCACACTATTGTAATTGGCTTTGGTCCTTCTGAAGTACAAGAACATA
GTAAAATTAATTTAGAACACAAAAACAGCCAACTTACAGCAGAAAGCATACAAACAGCTGTGAACGTTCC
TGCAGCAAACTCTAGAGTAGTAACAACTAATGATATGGACATGTTAAAGGACAGAAGTACACATAAGCCA
GAATTGCTGAAGGAAAAGCAAAACATCAAAATCTATGGAAGAAAAAGTATTGGTAGACTGAAAATTGATA
AAACTATATTATTTTCAGAGGGTAATGAGGGTGATATGGATATCACCAAGAGTTGCACAGTCAAAATAAA
TCATAGATCTTTATTAGATAAGCATGATTCTCATTTAGTATCTTTGGCAGGAACTTCTAAAACCATTTTG
CATGCACGTGGTCAGGTTGAAATGGAAATCAATAGAAGTCACACAACTCCTTTAGAATGTAAAATTATCT
CGCCCAGTGATATAACTCCTGGTGATCTGGATAAGACTATGATGTCTATAGATGATCATGAGGAACTAGA
CATGACCAAGTCCCATACTGTTTTCATTGACTACCAAGCAGAGGCAAAAGGTGTACTTCCAGACAGACTT
GACTTTCAATTATCCAAAAAGGAAAGCCTACAGAAGCCGAAAGTGACATCTCTGGCTGAAGAGATTTACA
TTTCAAAAAATAGTGAAAGCAACCATCTACCAGCAAAAGGCAGCCAGCTAACAATATTAGAGGAAGGGTC
TAATAGCGGGCTTGGAGAGGAAACTAATGATGCACAAAAGCCTGGATTTCTGAATGAACTTCTGTCAGGC
AAAACTCAGAGAAGAAAAAGCCTTAGCCTCAAAAACAAGAGTATTACATTTCCAGAGAATGATAAAAGTT
ATAGAGAGATCCCTCAGAGTTCTGCAGTAGAAATAAATAATGAAACTAGGCTGGAAGACAGAAAGGGCTT
CAGTTTTGTGCCATTGGCAGGAACTTCCAAACCAGTTTTGTCTGCATATGGGCCCGAGGACATGGAGATT
TCTATAGGTCAAACCACTGCTTCAGAATATAAAACTGTCCCACCAGAAGAAATAACTACTATACCTATGG
ATAAAACTGTAATGTTTGTAGATAATTTCGGTGATCTGGATGTCACCAGATCCCATACGGTTTTCATCGA
TTGTCAAGCCAAAGAAAAGGTACTTGATGAATATACTAACTTGGGAATACAGAAAACAAAAACTTTGAGT
GGTTCTGAAGGTGATACCCATATTCAAGAAATCACAAAAAACCCAGCAGCTCAACACAAACACCATATGA
CAACTGTTATTCCTTCTAGTACAGTAGTTAGTGATCAAAGTTCAATGAAAATCAAGTTTCACAAAGCTGA
TAGAGATGAGGAGGTCAAAGGAAAGGAAGTGGAAGCCAATATGCTGAAACAAACTAAACCTGAAAGCTGT
CTGTTAAATATAACAGATGGAAAAAATGTGGATTTTACAAGCAGTTATACAGCTGATGTTTGTAGATCCA
GTGACAAGTATTCCTCTTTACCAAATATTTCTTCTTCTGATAATTCGGGTGGTAATACTATGTCCTTGTG
TGATAAAAATAAGGAGAAAGCTTATAATTGCCAAGTGCCAAATGAATTTACTTATGCAGCTATCTTACCA
AGTACATATCACATGGATTCTAAAAAACTGTCTGTCTTTCCACCTTGTCCTTCAAAAGAAGTCACTCAAA
CTGAAAGTGCCATAGCGCTGCTTAAAGATGAAGATCCGGTAGAAGAGCCTCTGGGGGAGATGGCTACATT
TAACTCAAAGCATGTATCTCTTAACCTGGCAAAGGATCAAACAGAGGCCTTTGTTGATGTTAGTGTTGCT
TCTCAGCCTCATCTCTCAGCCCAACAAAGTCCATCAACTCAAAAAGGGCAGGATGTTGCCCGTAGAGATG
AAGGAATATTAGCTAAAGCTGGGAAGAAGGCTTTACCTTTTCTTCTAGAAAATGTCGCTGCATCCACATG
GGAAAATGAGTCCAAAATACCCACTAATGTGGAACACTTTGCTGTAACCTATGAAAAAGAACTGAGTATA
AGTATTCAAACAGATAAATGTAATACAAATGTACAGAGCCCTAGTAACTCGGCCCTGACAACACAAGTCA
TTCAGACGCATGCAAATGCTGAAGGAGCACTAGACTTTTTAGTTCCATCTACTGTTTCATGTTTTAGTAG
TACCAAACCAAGTCTGAGTAATTTGAATAGAAAAACTGAGGAGGTCTTAGACTTTCAGACTGTTAATTTA
TTACCTCCTGCCGAACAGTTACTTGAAGAAGGAAGTCAGGCACATAGTATGAGTATAGTACAAGCTACAG
AAATATATAGACTAGGTTCCAGGAATGATAGAGATGAAGAAAGTAAAACTTTCTGTAATGAGGCTGAAAC
TACATCTGTACCACTAAAAACAGCTGTTAAAGACAAAACAAGAAGATGTTCATTGGGGATATTTTTACCC
AAATTACCAAGCAAGAGAAGTTGTAGTATCACTGGTGTTGATGACCTGGAACAGATTCTAGCAGATGCAG
CTGACTTAACTCAACTAGAAACTCAGCCAGTCTGTAGTAAAGATCCAGGCATTGGATCTGTTGCAGCCAA
ACTGAATTTGAGTCCATCTCAGTTTATAAATGAGGAAAATCTCCCTGTATATCCTGGTGAGATACTTTCA
TCAGATTCTGTTAGCCTGGACATTGAGGAAAGTGTTCTGATTGACACATCTCAGAGAGAGAGTTTACCGT
CTGAAAACAAAACCGAAAACTGCAGGGCCCAAAAAAGAACCCGGGTTGAAGAAAATGATGTTACAAATGA
GAAAAAAATCAGAACACATGACAGTGCACAAGATCAAGAGGTAAGCTGTCTTGAGCCAAAAAATGTTCTT
GAATTTTAA

Translation (1612 aa):
MDGVYSEANEENDNTQRPVRRQHSSILKPPRSPLQDLKCGNQTNQEPNPPRKRKSSRRVSFADTIKVFQT
ESHMKTERNSEISGMNTLLCAPIQTQMQQKEFSITDCNHERKHANDQTVIFSDENQMDLTASHTVMITKG
LSDCTKNENSTKIDTTSFLENLKHHAANSRIKKDLACSTVSLSQNIFSEKINSDNFIKRLKTGKHISSST
ELDKENAEIPVYSKDSNSASSTYQMHASLGVDENSSNRTRIFREQDDGMNLTQCHTACIKTWIPPSTEAK
IGEFKGDKTIYGNECMELTTNYTIQVLSSENNLSERETQTQNGMNVTTVDGATAPAPEKKTALKDKLNAA
FQGSFPNPENKIHIIKCHPIESETHTVTQISSQSASTLAVTSKSICSSPAIEGYKTIFHSSSNDAMELTK
CLSAMEEEKKLLKADDKYSKICTNPDAGPLREKTIYLEEDSMDITKSHTVAIDNKIFKHDQENIKKEIIA
IPIFEKEMVLRNLMPMSKDEKRDVNYISVPQVSKESLQRSQTNTLSVSLTDKKMEFLADEDMDLTKSHTT
KLSQVIPTTFDLASKNVTKSYSHSKSPLNEWESLDKQVVLGQHSKLPLPQRKDRDDPDCSHHKIMYSEEL
QTMDLTKSHTIVIGFGPSEVQEHSKINLEHKNSQLTAESIQTAVNVPAANSRVVTTNDMDMLKDRSTHKP
ELLKEKQNIKIYGRKSIGRLKIDKTILFSEGNEGDMDITKSCTVKINHRSLLDKHDSHLVSLAGTSKTIL
HARGQVEMEINRSHTTPLECKIISPSDITPGDLDKTMMSIDDHEELDMTKSHTVFIDYQAEAKGVLPDRL
DFQLSKKESLQKPKVTSLAEEIYISKNSESNHLPAKGSQLTILEEGSNSGLGEETNDAQKPGFLNELLSG
KTQRRKSLSLKNKSITFPENDKSYREIPQSSAVEINNETRLEDRKGFSFVPLAGTSKPVLSAYGPEDMEI
SIGQTTASEYKTVPPEEITTIPMDKTVMFVDNFGDLDVTRSHTVFIDCQAKEKVLDEYTNLGIQKTKTLS
GSEGDTHIQEITKNPAAQHKHHMTTVIPSSTVVSDQSSMKIKFHKADRDEEVKGKEVEANMLKQTKPESC
LLNITDGKNVDFTSSYTADVCRSSDKYSSLPNISSSDNSGGNTMSLCDKNKEKAYNCQVPNEFTYAAILP
STYHMDSKKLSVFPPCPSKEVTQTESAIALLKDEDPVEEPLGEMATFNSKHVSLNLAKDQTEAFVDVSVA
SQPHLSAQQSPSTQKGQDVARRDEGILAKAGKKALPFLLENVAASTWENESKIPTNVEHFAVTYEKELSI
SIQTDKCNTNVQSPSNSALTTQVIQTHANAEGALDFLVPSTVSCFSSTKPSLSNLNRKTEEVLDFQTVNL
LPPAEQLLEEGSQAHSMSIVQATEIYRLGSRNDRDEESKTFCNEAETTSVPLKTAVKDKTRRCSLGIFLP
KLPSKRSCSITGVDDLEQILADAADLTQLETQPVCSKDPGIGSVAAKLNLSPSQFINEENLPVYPGEILS
SDSVSLDIEESVLIDTSQRESLPSENKTENCRAQKRTRVEENDVTNEKKIRTHDSAQDQEVSCLEPKNVL
EF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH