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Report for CCDS89537.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89537.1 Public Mus musculus 2 Fsip1 23 108 98 CCDS HistoryNCBI Gene:71313Re-query CCDS DB by CCDS ID:89537.1Re-query CCDS DB by GeneID:71313See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89537.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000231133.1 ENSMUSP00000155242.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231133.1Link to Ensembl Protein Viewer:ENSMUSP00000155242.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231133Re-query CCDS DB by Protein ID:ENSMUSP00000155242
Current member NCBI NM_001374672.1 NP_001361601.1 Accepted alive Link to Nucleotide Sequence:NM_001374672.1Link to Protein Sequence:NP_001361601.1Re-query CCDS DB by Nucleotide ID:NM_001374672Re-query CCDS DB by Protein ID:NP_001361601Link to BLAST:NP_001361601.1

Chromosomal Locations for CCDS 89537.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 118130560 118130612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118136114 118136624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118222326 118222460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118232904 118233059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118236914 118237024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118240392 118240549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118241643 118241735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118248295 118248391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118249806 118249960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118251639 118251819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118253286 118253417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1782 nt):
ATGCCAATGGATATTATAAAGGGGAACCTAGACGGAATTTCAAAACCAGCCTCAAGTTCAAGATCACGTC
CTGGGAGCCGAAGTTCAAATGGTTCTCTGGAGGTGCTCACACCAGAACCAGGGTCTGTCAAGATTGACAT
GGTAAACAAGTTGAATTCTGGCCAAGAGGGCCACACATCAAACAGTGGTGTGGAAGAAAGAAGGAATAGT
AATGATGCTAAGTGGGCAGACGACTCCAAGACAAAACCAGCCAAGGAGAGCTCAGATGAAGACCCGGACA
TGCCTCAACCTCAGGCGACCCCTGAGCATTCAGATGATCCCAAATTAGAAGAGACGAATGCTGTACTTCA
AAATGCTATTCGTAAGATGCACAGACTCGACAAGCTATTGGCCAAAAAACAATGTAGAGAAAAGGAAGTT
AAAAAGCAAGGTCTAGAAATGAGAGTTAAGCTGTGGGAAGAGCTCAAGTCTGCAAAAAACACTGAAGACT
TAGAAAATGACGAGGAGTTGGGAAACACAAAAAAGTTTTTGTGCTTGACTTCAGAATCTGCAGGGAAAGC
AGCTGCAGAGGCATTGCATTGTGAGTTTGAAGACGCCCTTTTCTCAGTGTTTCATACTCAGATTCCTCCA
GAAACTTACGAAAATCTCATGGAGAAAGATTTTACCTGTGATGTGGAGAAAAATGAACCATTGATCATAA
CAGAAAAGCAACCATTTTCAAATACAGAAGCGATTGAGCCTAGGAGTGAAGACAGCCAGGGTTTCATTAG
GCAGAACGCTGAACACAGCCAGGATTTTATTAAGCGAAACATTGAGTTGGCCAAGCATTCGAGAAGCCCA
GTGGTCATGGTTGAAGGAGAGAAGAAAAGACTGGATGAGCTCCTGCAAGGCCTGGATGATGCAGACTCAG
GACTCTCCAGTGCCGAGGGCGATCAGTGCGGTTGGCTGGTTCCAGGAGAAGGCTATACCCTTGCAGCCAC
TGAGTCTCAGCAGCTTGCTGAGATTGACATAAAGCTTCAGGAACTCTCTGTTGACTCTCCCACCATCTTC
AGCCTTGAAAGTCAGAGCCATAAGGGTGATATGGAATGTGATGCCAATGAAGAAAGAAATACGGAACCAA
CTCCCGGAGAGAAGATACTCCGGGACCGCAAAGAGCAAAGGGACCGGGAGTCTCGGCTGAGAGCCATCGA
TGGCAAGCTGAAAGAGCTCAGTGAACAGCTAAACTCCCCAACACGTCTTTCTGAGGAACAGCTGAAGTGT
CTTCTGGATGAGTGTGTCTCCAAACAGAAATGCATTGCTCTTGGTCTTTCTTCTGAAAGAGAAAACAAAG
ATACTGATACAGCACTTGGGTCCCCACAGCTTTGCCCATCCACCCTCTGTGACTTACCAGAAGAGGCCGG
AGCCAAGGTCCAGGAAACCCAGCTAGACGATGCAAACAGGCTTGAGAGTGAGGGATGTGCATATCCCGCA
GACTCCTATCTTACCAAAGCCTTGACTGGACACTACAAACCCGAGGCTCTGCTCCTCGAAGTAGAGACCA
TGAAACACCTCCAGTTCTCCAAGGAGGAGGCTTTTAATGATGCAGTAGACTATTTTATGTCAAAGACCAT
TGGCATTGGGAGACTGAAAAAGCCCCCTTTCTTGGATGATCCCCTGGATGACGTCAGCGTGAACTCCTCC
TCAGATGACCAAGAGTTGAAAACCAGCCTTGCAGAGAAATCAGTAGTAGATGATCAGGAGGCTGGGGATG
CTGTGAAGGAAATAGGAGAACATGAAGCATGA

Translation (593 aa):
MPMDIIKGNLDGISKPASSSRSRPGSRSSNGSLEVLTPEPGSVKIDMVNKLNSGQEGHTSNSGVEERRNS
NDAKWADDSKTKPAKESSDEDPDMPQPQATPEHSDDPKLEETNAVLQNAIRKMHRLDKLLAKKQCREKEV
KKQGLEMRVKLWEELKSAKNTEDLENDEELGNTKKFLCLTSESAGKAAAEALHCEFEDALFSVFHTQIPP
ETYENLMEKDFTCDVEKNEPLIITEKQPFSNTEAIEPRSEDSQGFIRQNAEHSQDFIKRNIELAKHSRSP
VVMVEGEKKRLDELLQGLDDADSGLSSAEGDQCGWLVPGEGYTLAATESQQLAEIDIKLQELSVDSPTIF
SLESQSHKGDMECDANEERNTEPTPGEKILRDRKEQRDRESRLRAIDGKLKELSEQLNSPTRLSEEQLKC
LLDECVSKQKCIALGLSSERENKDTDTALGSPQLCPSTLCDLPEEAGAKVQETQLDDANRLESEGCAYPA
DSYLTKALTGHYKPEALLLEVETMKHLQFSKEEAFNDAVDYFMSKTIGIGRLKKPPFLDDPLDDVSVNSS
SDDQELKTSLAEKSVVDDQEAGDAVKEIGEHEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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