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Report for CCDS89491.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89491.1 Public Mus musculus 2 Tank 23 108 98 CCDS HistoryNCBI Gene:21353Re-query CCDS DB by CCDS ID:89491.1Re-query CCDS DB by GeneID:21353See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89491.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112502.7 ENSMUSP00000108121.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112502.7Link to Ensembl Protein Viewer:ENSMUSP00000108121.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112502Re-query CCDS DB by Protein ID:ENSMUSP00000108121
Current member NCBI NM_001374667.1 NP_001361596.1 Accepted alive Link to Nucleotide Sequence:NM_001374667.1Link to Protein Sequence:NP_001361596.1Re-query CCDS DB by Nucleotide ID:NM_001374667Re-query CCDS DB by Protein ID:NP_001361596Link to BLAST:NP_001361596.1

Chromosomal Locations for CCDS 89491.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 61578641 61578693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61613651 61613798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61626906 61627014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61627721 61627839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61643715 61643785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61644307 61644422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61649738 61650288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61653379 61653555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGTCTTTAAAGAGACATAGTCTGCGAAGGAACGCCTGTCACCTGGAGACGAGAGCTGGCATTCCTACCA
TCCTTTATAGTGATGCTACAGGACAAAGAGGAATGGATAAAAACATTGGTGAGCAACTCAATAGAGCATA
TGAAGCCTTCCGACAGGCATGCATGGATAGAGATTCAGCAGTAAGAGAGCTACAGCAAAAGACTGAGAAC
TATGAACAAAGAATACGCGAGCAACAGGAACAGCTGTCATTTCAACAAAACCTAATTGACAGGCTGAAAT
CACAGCTACTTCTCGTGGATTCTAGTCGAGATAACAGTTATGGCTATGTACCTTTGCTTGAAGACAGTGA
CAGAAGGAAGAATAATTTGACCCTTGATGAACCACATGATAAAGTGAAACTAGGAACACTGAGAGATAAG
CAATCAAAGGTGAGACGACAAGAAGTTTCTTCTGGAAAAGAATCCGCCAAGGGTCTCAACATCCCTCTGC
ATCACGAAAGGGATAATATAGAGAAGACTTTCTGGGACCTTAAAGAAGAATTTCATAGGATTTGCTTGCT
AGCAAAAGCACAGAAAGATCACTTAAGCAAACTTAATATACCAGATATTGCAACTGACACACAGTGTTCT
GTGCCTATACAGTGTACTGATAAAACAGAGAAACAAGAAGCGCTGTTTAAGCCCCAGGCTAAAGATGATA
TAAATAGAGGTATGTCGTGCGTCACAGCTGTCACACCAAGAGGACTGGGCCGGGATGAGGAAGATACCTC
TTTTGAATCACTTTCTAAATTCAATGTCAAGTTTCCGCCTATGGACAATGACTCTATTTTTCTACATAGC
ACTCCAGAGGCCCCGAGCATCCTTGCTCCTGCCACACCTGAGACAGTGTGCCAGGACCGATTTAATATGG
AAGTCAGAGACAACCCAGGAAACTTTGTTAAAACAGAAGAAACTTTATTTGAAATTCAGGGAATTGACCC
CATAACTTCAGCTATACAAAACCTTAAAACAACTGACAAAACAAACCCCTCAAATCTTAGAGCGACGTGT
TTGCCAGCTGGAGACCACAATGTGTTCTATGTAAATACGTTCCCACTTCAAGACCCGCCTGACGCACCTT
TTCCCTCACTGGATTCCCCAGGAAAGGCTGTCCGAGGACCACAGCAGCCCTTTTGGAAGCCTTTTCTTAA
CCAAGACACTGACTTAGTGGTACCAAGTGATTCAGACTCAGAGCTCCTTAAACCTCTAGTGTGTGAATTC
TGTCAAGAGCTTTTCCCACCATCCATTACATCCAGAGGGGATTTCCTCCGGCATCTTAATACACACTTTA
ATGGGGAGACTTAA

Translation (447 aa):
MSLKRHSLRRNACHLETRAGIPTILYSDATGQRGMDKNIGEQLNRAYEAFRQACMDRDSAVRELQQKTEN
YEQRIREQQEQLSFQQNLIDRLKSQLLLVDSSRDNSYGYVPLLEDSDRRKNNLTLDEPHDKVKLGTLRDK
QSKVRRQEVSSGKESAKGLNIPLHHERDNIEKTFWDLKEEFHRICLLAKAQKDHLSKLNIPDIATDTQCS
VPIQCTDKTEKQEALFKPQAKDDINRGMSCVTAVTPRGLGRDEEDTSFESLSKFNVKFPPMDNDSIFLHS
TPEAPSILAPATPETVCQDRFNMEVRDNPGNFVKTEETLFEIQGIDPITSAIQNLKTTDKTNPSNLRATC
LPAGDHNVFYVNTFPLQDPPDAPFPSLDSPGKAVRGPQQPFWKPFLNQDTDLVVPSDSDSELLKPLVCEF
CQELFPPSITSRGDFLRHLNTHFNGET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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