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Report for CCDS89157.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89157.1 Public Mus musculus 17 Vit 23 108 98 CCDS HistoryNCBI Gene:74199Re-query CCDS DB by CCDS ID:89157.1Re-query CCDS DB by GeneID:74199See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89157.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000232859.1 ENSMUSP00000156543.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232859.1Link to Ensembl Protein Viewer:ENSMUSP00000156543.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232859Re-query CCDS DB by Protein ID:ENSMUSP00000156543
Original member Current member NCBI NM_001197028.1 NP_001183957.1 Accepted alive Link to Nucleotide Sequence:NM_001197028.1Link to Protein Sequence:NP_001183957.1Re-query CCDS DB by Nucleotide ID:NM_001197028Re-query CCDS DB by Protein ID:NP_001183957Link to BLAST:NP_001183957.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001183957.1 628 Q8VHI5-2 628 99.8408% 0 1

Chromosomal Locations for CCDS 89157.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 78534633 78534684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78566015 78566171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78574085 78574218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78579354 78579431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78586658 78586843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78599824 78599868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78601844 78601906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78605421 78605568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78619557 78619660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78622641 78622867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78624726 78625239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78626745 78626923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1887 nt):
ATGGGAATTGTTGTTCCCACTATGAAGGCATCTGTTATTGAAGTGTTGCTTGCTGTGCCTCAGATCAACT
GCGATGTCAAAGCTGGAAAGATCATCAATCCTGAGTTCATGGTGAAATGTCCAGCGGGCTGCCAGGACCC
CAAATACCATGTTTACGGCACTGGCGTCTACGCGTCTTACTCCAGCGTGTGTGGCGCCGCAATTCACAGC
GGTGTGCTGGATAATTCAGGAGGGAAAATACTTGTTCGGAAAGTTGCTGGGCAGTCTGGTTACAAAGGAA
GCTACTCGAATGGGGTTCAGTCTTTATCTTTACCCAGATGGCGAGAGTCCTTCATCGTCGCAGAAAGTAA
GCCCCAAAAGGGTGTAGCCTACCCATCGACTCTTACATATTCATCATCGAAAACTGCAGCTGCTAAAGCA
GGTGAGACCACAAAAGCCTATGAGAAGCCATCTATTCCAGGGACAACCATACAGCCTGTCACCCTGACAC
AGGCTCAAGCTACCCCTGTAGCTGAGGTCACCCACAGATCCACCTCAAAGCCATTTGCAGCATCTGTCAC
CAACAGCCCCAGACCCCAACCTGTGGGCCACAGGAGTCAGGAGATGGAAGAGGTGGACGGGTGGAAGCCT
GGACCAGTCCTTTTAGATTCAGGATTTGTGCCAAAAGAAGAACTCAGCACACAGTCTTCGGAGCCAGTGC
CGCAGGGAGATCCAAACTGCAAAATTGACTTGTCCTTCTTAATTGATGGGAGCACCAGCATCGGCAAGCG
CCGCTTCCGGATCCAGAAGCAGTTCCTAGCGGACGTCGTCCAGGCTCTTGACATCGGCCCTGCCGGTCCC
CTCGTGGGTGTTGTTCAGTACGGAGACAATCCTGCTACCCAGTTTAACCTCAAAACTCACATGAATTCTC
AAGATCTGAAGACAGCTATAGAGAAAATTACCCAGAGAGGAGGCCTTTCTAATGTAGGCCGTGCCATCTC
CTTTGTAACCAAGACCTTCTTTTCCAAAGCCAATGGGAACAGAGGTGGTGCTCCCAATGTGGCTGTGGTC
ATGGTGGATGGCTGGCCCACAGACAAGGTGGAAGAGGTGTCACGAGTTGCCAGAGAGTCTGGGATCAACG
TCTTCTTCATCACCGTCGAAGGGGCCGCCGAAAGGGACATACAGCATGTGGTGGAGCCCGGTTTTGCCAG
CAAGGCAGTGTGCAGAACAAACGGGTTCTACTCCTTCAATGTGCAGAGCTGGCTCAGCCTTCACAAAACA
GTGCAGCCCCTGGTGAAGCGGGTCTGCGACACGGACCGCCTAGCCTGCAGCAAGACCTGTTTAAACTCTG
CGGACATAGGCTTTGTCATCGATGGGTCTAGCAGCATGGGGACAAGCAACTTCCGCACGGTCCTGCAGTT
CGTGGCCAACCTCAGCAAGGAGTTTGAGATTTCAGACACCGACACACGCGTCGGGGCCGTGCAGTACACC
TACGAGCAGCGGCTCGAATTTGGGTTCGACAAGTATAACAGCAAAGCCGACATCCTCAGTGCCATCAGGA
GGGTGGGGTACTGGAGCGGAGGCACCAGCACAGGGGCTGCCATCCAGTATGCCCTCGAACAGCTCTTCAA
GAAGTCCAAACCGAACAAGAGGAAGGTAATGATCATTATCACTGACGGCAGGTCTTACGATGACGTGCGG
ATCCCAGCCATGGCTGCCTACCAGAAGGGGGTGATCACGTATGCAATAGGCATTGCGTGGGCTGCTCAGG
ACGAGCTGGAGGTAATGGCCACTCACCCCGCCAAGGACCATTCCTTCTTTGTGGATGATTTTGACAACCT
CTACAAAATTGCCCCCAGGATCATCCAGAATATTTGTACAGAGTTCAACTCACAGCCTCGAAACTGA

Translation (628 aa):
MGIVVPTMKASVIEVLLAVPQINCDVKAGKIINPEFMVKCPAGCQDPKYHVYGTGVYASYSSVCGAAIHS
GVLDNSGGKILVRKVAGQSGYKGSYSNGVQSLSLPRWRESFIVAESKPQKGVAYPSTLTYSSSKTAAAKA
GETTKAYEKPSIPGTTIQPVTLTQAQATPVAEVTHRSTSKPFAASVTNSPRPQPVGHRSQEMEEVDGWKP
GPVLLDSGFVPKEELSTQSSEPVPQGDPNCKIDLSFLIDGSTSIGKRRFRIQKQFLADVVQALDIGPAGP
LVGVVQYGDNPATQFNLKTHMNSQDLKTAIEKITQRGGLSNVGRAISFVTKTFFSKANGNRGGAPNVAVV
MVDGWPTDKVEEVSRVARESGINVFFITVEGAAERDIQHVVEPGFASKAVCRTNGFYSFNVQSWLSLHKT
VQPLVKRVCDTDRLACSKTCLNSADIGFVIDGSSSMGTSNFRTVLQFVANLSKEFEISDTDTRVGAVQYT
YEQRLEFGFDKYNSKADILSAIRRVGYWSGGTSTGAAIQYALEQLFKKSKPNKRKVMIIITDGRSYDDVR
IPAMAAYQKGVITYAIGIAWAAQDELEVMATHPAKDHSFFVDDFDNLYKIAPRIIQNICTEFNSQPRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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