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Report for CCDS88997.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88997.1 Public Mus musculus 17 Prdm9 23 108 98 CCDS HistoryNCBI Gene:213389Re-query CCDS DB by CCDS ID:88997.1Re-query CCDS DB by GeneID:213389See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88997.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000147532.7 ENSMUSP00000118454.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000147532.7Link to Ensembl Protein Viewer:ENSMUSP00000118454.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000147532Re-query CCDS DB by Protein ID:ENSMUSP00000118454
Original member Current member NCBI NM_001361436.1 NP_001348365.1 Accepted alive Link to Nucleotide Sequence:NM_001361436.1Link to Protein Sequence:NP_001348365.1Re-query CCDS DB by Nucleotide ID:NM_001361436Re-query CCDS DB by Protein ID:NP_001348365Link to BLAST:NP_001348365.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348365.1 283 Q96EQ9-4 283 100% 0 0

Chromosomal Locations for CCDS 88997.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 15553281 15553545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15554688 15554755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15555087 15555358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15555566 15555667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15557301 15557445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGCCATTTAGTGGTGAATCTAATGTGAAGGAAGGGTCTGGAATAGAAAATTTGCTGAATACAAGTGGCT
CAGAACACGTCCAGAAACCAGTGTCCTCCCTTGAAGAAGGAAATACCTCTGGACAGCACTCTGGGAAAAA
ACTGAAACTTAGGAAAAAGAACGTTGAAGTGAAAATGTACAGGCTGCGAGAGAGAAAGGGCCTTGCCTAT
GAGGAGGTCAGCGAGCCTCAGGATGATGACTATCTCTATTGTGAGAAGTGCCAGAATTTCTTCATCGACA
GTTGTCCCAACCATGGGCCTCCTTTATTTGTAAAAGACAGTATGGTGGACAGGGGGCATCCCAACCACTC
AGTCCTCAGTCTGCCCCCTGGGCTAAGAATTAGTCCATCGGGCATCCCTGAAGCTGGACTTGGAGTATGG
AATGAAGCATCTGATCTACCAGTCGGTCTGCACTTTGGCCCCTATGAGGGTCAGATCACAGAGGATGAAG
AGGCAGCCAACAGTGGTTACTCCTGGCTGATTACCAAGGGAAGAAACTGCTATGAGTATGTGGATGGACA
GGACGAGTCCCAAGCCAACTGGATGAGGTATGTGAACTGTGCCCGGGATGATGAAGAGCAGAACCTGGTA
GCCTTTCAATATCACAGGAAAATCTTCTATCGAACCTGCCGGGTTATCAGACCAGGTTGTGAGCTTCTGG
TCTGGTATGGGGATGAGTACGGCCAGGAACTGGGCATTAAGTGGGGAAGCAAGATGAAGAAAGGATTCAC
AGCAGGAAGAGGTGGGCACTATTATGATTCCTTAAAAAAGAAAGAGAAGAGGGAATTCTCCTTGAGAATT
TTCATTTTCTAA

Translation (283 aa):
MPFSGESNVKEGSGIENLLNTSGSEHVQKPVSSLEEGNTSGQHSGKKLKLRKKNVEVKMYRLRERKGLAY
EEVSEPQDDDYLYCEKCQNFFIDSCPNHGPPLFVKDSMVDRGHPNHSVLSLPPGLRISPSGIPEAGLGVW
NEASDLPVGLHFGPYEGQITEDEEAANSGYSWLITKGRNCYEYVDGQDESQANWMRYVNCARDDEEQNLV
AFQYHRKIFYRTCRVIRPGCELLVWYGDEYGQELGIKWGSKMKKGFTAGRGGHYYDSLKKKEKREFSLRI
FIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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