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Report for CCDS88760.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88760.1 Public Mus musculus 15 Oxr1 23 108 98 CCDS HistoryNCBI Gene:170719Re-query CCDS DB by CCDS ID:88760.1Re-query CCDS DB by GeneID:170719See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88760.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000230203.1 ENSMUSP00000155237.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230203.1Link to Ensembl Protein Viewer:ENSMUSP00000155237.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230203Re-query CCDS DB by Protein ID:ENSMUSP00000155237
Original member Current member NCBI NM_001358978.1 NP_001345907.1 Accepted alive Link to Nucleotide Sequence:NM_001358978.1Link to Protein Sequence:NP_001345907.1Re-query CCDS DB by Nucleotide ID:NM_001358978Re-query CCDS DB by Protein ID:NP_001345907Link to BLAST:NP_001345907.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345907.1 839 Q4KMM3-4 839 100% 0 0

Chromosomal Locations for CCDS 88760.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 41535705 41535727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41653465 41653661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41797474 41797556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41800471 41800578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41801582 41801695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41813574 41813726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41817082 41817266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41819839 41820578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41823327 41823495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41825890 41826052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41850459 41850584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41851375 41851527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41853322 41853417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41854921 41854994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41859158 41859293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2520 nt):
ATGTCTGTATCTAATCTATCATGGTTGAAGAAAAAGTCCCAGTCAGTGGATATTACTGCTCCAGGGTTCA
ACCCTTTAGGTGGTGCAGGGAAGCAAGCACCACAAGCCAGCAAGCCCCCGGCACCCAAGACCCCCATCAT
CGAAGAAGAACAGAACAACTCAGCAAACACCCAGAAGCATCCTTCCAGAAAAAGTGAACTGAAGAGGTTC
TATACCATTGACACTGGCCAAAAGAAGACCTTAGACAAGAAAGATGGGAGAAGGATGTCTTTTCAGAAGC
CTAAAGGAACCATTGAATATACTGTTGAATCAAGGGATTCTTTGAATAGCATAGCCCTGAAATTTGATAC
CACACCCAATGAACTTGTTCAGTTAAATAAGTTATTCTCTCGAGCAGTCGTGACTGGACAGGTTTTATAC
GTTCCTGATCCTGAATATGTCTCTAGTGTTGAGAGTTCCCCATCCCTCAGCCCTGTAAGCCCTCTGTCGC
CAACGTCATCCGAGGCTGAATTTGATAAAACCACGACTCCAGATGTAGCCCATCCAAAAGAAGCACCCCC
GGCATCGACTGTGAGCGGTATTCGGCCTGCGAGAGTTGTGTCTTCAACTTCTGAAGAAGAAGAAGCCTTT
ACTGAGAAATTTCTTAAAATTAATTGCAAATATATCACCATTGGCAAGGGCACAGTCAGTGGCGTCCTGC
TAGTCACACCAAATAACATAATGTTTGATCCACACAAGACAGACCCCTTGGTTCAAGAGAACGGTTGTGA
GGAATACGGCATCATGTGTCCGATGGAAGAGGTGATGTCAGCTGCCATGTACAAAGAGATTTTGGATAGC
AAAATAAAGGAATCACTGCCCATAGAACTAGATCAGTTGTCAGGAAGGGGGTCCTGCCATTCAAAGAAAG
CGACAGGAGTCTCTGCTGAGGACGCAGACCCGAGAGCGCGTGACCAGGGTAACGACAGTGCCAGCACTGC
TCCCAGGAGCACCGAGGAGTCTCTCTCGGAAGACGCTTTCACAGAGTCAGAACTCTCTCCTATCCGCGAG
GAGCTGCTCTCCTCGGAGCCGAGACAGGAGAAGTCATCTGATGCCTCGTCAGAATCTGTGCAGACTGTCA
GTCAGATGGAAGTCCAGTCCTTGACAGCCACGTCAGAGGCTGCTAACGTTCCTGACCGCACTAGCTCTAA
CCCTGGGGCTCTATCTCATGAAACTGGCTTAAGTGGTCTGGAAACAGCCACTAAAGGAGGAGATAAAGCT
ACAGAAAGCCTTCAAGAAGTCTCAGGCCCAAAGGAACAAAGCACAGAAGTAAAAGGTCAGGATAACCAGG
ATTCTTCCCACCAGGAAAGTTCACTGCAGCAAGAGGCAGGTGAAGACAGTGTATCTTCTGGAGAAACAGT
AGAACTGAAAGAAAAACCAGCTGTTCTTAAGGATCAACAAGGGCAGGAGCTAAAACGGGACTCAGAGACA
GAAGTAGAGGAGCTGCGCAAACTCTGGAAAACTCACTCTATGCAGCAAGCCAAGCAGCAAAGGGACACGA
TTCAGCAGGTGTCACAGAGAGAAAGTAAACACAGCAGCGCAGCAGCAGACGCACATGGAGAGGGCTCCTC
GCTGTTAAAGGAAAAGCGAAGGCATCGATTACATAAGTTCCTATGTCTCAGAGTCGGAAAACCAATGAGG
AAGACCTTTGTATCGCAAGCAAGTGCTACGATGCAACAGTATGCACAAAGAGATAAAAAACACGAATATT
GGTTTGCAGTGCCACAAGAAAGGACAGACCACTTGTATGCCTTCTTCATTCAGTGGAGTCCAGAAATCTA
TGCAGAAGATTCTGGTGAATACACCAGAGAGCCTGGATTCATAGTAGTCAAAAAGATGGACGAGTCTGAA
GCGAATGAAGCCCCTGCTGGTGAAGCAGCAGCCAGGGAGTGGGAGATTACTACAAGGGAAGACATCAACT
CAAAGCAGGTTGCTCCAGCAAAAGCAGACCTGGAGCCTGAATCTTTCCGACCAAACCTAAGCGACCCCAG
TGAACTCTTACTGCCTGATCAGATTGAAAAGCTTACTAAGCACCTTCCACCAAGAACCATTGGCTATCCA
TGGACGCTTGTGTACGGTACTGGGAAGCATGGTACAAGTTTGAAGACCCTTTATCGAACAATGACAGGTT
TAGACACTCCGGTGCTGATGGTGATTAAAGACAGTGATGGACAGGTTTTTGGTGCATTAGCATCAGAGCC
ATTTAAAGTAAGTGATGGCTTTTACGGTACTGGAGAAACATTTGTTTTCACATTCTGCCCAGAATTTGAG
GTCTTTAAGTGGACAGGAGATAATATGTTTTTTATCAAAGGAGACATGGATTCATTAGCATTTGGTGGTG
GAGGAGGGGAATTTGCTCTTTGGCTTGATGGAGATCTCTACCATGGAAGAAGCCATTCCTGTAAAACGTT
TGGGAATCATACACTTTCTAAGAAGGAAGATTTCTTTATCCAAGACATTGAAATCTGGGCTTTTGAATAA

Translation (839 aa):
MSVSNLSWLKKKSQSVDITAPGFNPLGGAGKQAPQASKPPAPKTPIIEEEQNNSANTQKHPSRKSELKRF
YTIDTGQKKTLDKKDGRRMSFQKPKGTIEYTVESRDSLNSIALKFDTTPNELVQLNKLFSRAVVTGQVLY
VPDPEYVSSVESSPSLSPVSPLSPTSSEAEFDKTTTPDVAHPKEAPPASTVSGIRPARVVSSTSEEEEAF
TEKFLKINCKYITIGKGTVSGVLLVTPNNIMFDPHKTDPLVQENGCEEYGIMCPMEEVMSAAMYKEILDS
KIKESLPIELDQLSGRGSCHSKKATGVSAEDADPRARDQGNDSASTAPRSTEESLSEDAFTESELSPIRE
ELLSSEPRQEKSSDASSESVQTVSQMEVQSLTATSEAANVPDRTSSNPGALSHETGLSGLETATKGGDKA
TESLQEVSGPKEQSTEVKGQDNQDSSHQESSLQQEAGEDSVSSGETVELKEKPAVLKDQQGQELKRDSET
EVEELRKLWKTHSMQQAKQQRDTIQQVSQRESKHSSAAADAHGEGSSLLKEKRRHRLHKFLCLRVGKPMR
KTFVSQASATMQQYAQRDKKHEYWFAVPQERTDHLYAFFIQWSPEIYAEDSGEYTREPGFIVVKKMDESE
ANEAPAGEAAAREWEITTREDINSKQVAPAKADLEPESFRPNLSDPSELLLPDQIEKLTKHLPPRTIGYP
WTLVYGTGKHGTSLKTLYRTMTGLDTPVLMVIKDSDGQVFGALASEPFKVSDGFYGTGETFVFTFCPEFE
VFKWTGDNMFFIKGDMDSLAFGGGGGEFALWLDGDLYHGRSHSCKTFGNHTLSKKEDFFIQDIEIWAFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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