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Report for CCDS88679.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88679.1 Public Mus musculus 14 Nup58 23 108 98 CCDS HistoryNCBI Gene:71844Re-query CCDS DB by CCDS ID:88679.1Re-query CCDS DB by GeneID:71844See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88679.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000225111.1 ENSMUSP00000153625.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225111.1Link to Ensembl Protein Viewer:ENSMUSP00000153625.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225111Re-query CCDS DB by Protein ID:ENSMUSP00000153625
Original member Current member NCBI NM_001362439.1 NP_001349368.1 Accepted alive Link to Nucleotide Sequence:NM_001362439.1Link to Protein Sequence:NP_001349368.1Re-query CCDS DB by Nucleotide ID:NM_001362439Re-query CCDS DB by Protein ID:NP_001349368Link to BLAST:NP_001349368.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349368.1 537 Q8R332-3 537 100% 0 0

Chromosomal Locations for CCDS 88679.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 60221563 60221678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60223317 60223415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60228709 60228910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60232074 60232156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60232547 60232665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60234230 60234309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60238452 60238626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60239481 60239546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60240774 60240798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60242547 60242657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60243357 60243494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60244514 60244663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60247324 60247466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60251163 60251269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1614 nt):
ATGGCCACGGGGTTCTCCTTCGGGTCTGGGACCCTCGGCTCCACCACTGTGGCCCCCGGCGGGACCGGAG
CGGGCAGCGGCTTCTCCTTCGGGACCGTCGCGTCTAGCACACCTTCTGTGGGACTCAACTTTGGATCTCT
TGGAAGCTCTGTGACCCCAGCATCTACATCTGCTTCAGCTGGTGGTTTTGGAACAGGCCTCTTTGGATCT
AAGCCTGCCACTGGATTTACTCTAGGAGGAACAAGTGCAGGAACAGCAGCAACAACATCTGCGTCTACAA
CAGGCTTCAGTTTAGGATTCAGTAAACCTGCGGCATCTGCCACACCATTTGCCCTGCCTGTCACTTCTAC
CTCAGCTAGTGGTCTTACTCTCTCATCTGCTCTGACATCAACTCCAGCAGCATCCACAGGATTTACTTTG
AATAACTTGGGAGCAACACCAGCCACAACTACAACAGCATCAACTGGGCTTTCTTTAGGGGGAGCCTTAG
CTGGTTTGGGAGGTTCACTTTTTCAGAGTGGAAACACAGCAACATCAGGTCTCGGACAAAATGCTTTAAG
CTTGTCTTTGGGAACTACAGCACCTACTTCAGCTGCCAGCAATGAAGGCCTTGGTGGTATAGACTTTAGT
ACCTCATCAGATAAGAAGAGTGATAAAACGGGAACAAGGCCAGAGGACAGTAAAGCACTGAAAGATGAAA
ACCTGCCTCCTGTCATCTGTCAGGATGTTGAAAACCTCCAGAAATTTGTCAAGGAACAGAAACAAGTCCA
AGAAGAAATTAGCCGAATGTCTTCCAAAGCAATGCTTAAAGTCCAGGAAGACATCAAGGCCCTGAAGCAG
CTTCTGTCATTGGCTGCCAGTGGGTTGCAGAGGAATACACTCAATATTGACAAACTGAAGTTAGAAACTG
CTCAGGAGTTAAAGAATGCCGAAATAGCTTTAAGAACCCAGAAAACACCACCTGGACTCCAACATGAAAA
CACAGCTCCTGCTGACTACTTCAGAATATTGGTTCAGCAGTTTGAGGTACAGCTTCAGCAGTACAGGCAG
CAGATTGAAGAACTAGAAAACCATCTTGCCACTCAAGCCAGTAATTCACATATAACTCCTCAAGATTTAT
CAATGGCTATGCAGAAAATTTATCAAACATTTGTAGCTTTAGCCGCACAACTTCAATCTATTCATGAAAA
TGTCAAGGTGCTTAAAGAACAGTATCTCGGCTACAGAAAAATGTTTTTGGGTGATGCTGTGGATGTGTTT
GAAGCCAGGAGAACAGAAGCCAAGAAGTGGCAGAATGCACCCAGAGTTACTACTGGACCCACTCCTTTCA
GCACCATGCCAAACGCAGCAGCCGTTGCCATGGCTGCAACACTTACACAGCAGCAACAGCCTGCTACAGG
GCCACAGCCGTCTCTGGGAGTTAGTTTTGGAACGCCATTCGGCTCAGGTATTGGCACTGGCTTGCAATCA
AGTGGCTTAGGTTCTTCAAACCTTGGAGGATTTGGAACTAGCTCTGGTTTCGGATGCGGTACCACAGGGG
CCTCCACATTTGGATTTGGAACAACAGATAAACCCTCAGGAAGTCTTAGTGCAGGTTTGTGTGCTTCTGC
CTGA

Translation (537 aa):
MATGFSFGSGTLGSTTVAPGGTGAGSGFSFGTVASSTPSVGLNFGSLGSSVTPASTSASAGGFGTGLFGS
KPATGFTLGGTSAGTAATTSASTTGFSLGFSKPAASATPFALPVTSTSASGLTLSSALTSTPAASTGFTL
NNLGATPATTTTASTGLSLGGALAGLGGSLFQSGNTATSGLGQNALSLSLGTTAPTSAASNEGLGGIDFS
TSSDKKSDKTGTRPEDSKALKDENLPPVICQDVENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQ
LLSLAASGLQRNTLNIDKLKLETAQELKNAEIALRTQKTPPGLQHENTAPADYFRILVQQFEVQLQQYRQ
QIEELENHLATQASNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRKMFLGDAVDVF
EARRTEAKKWQNAPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGPQPSLGVSFGTPFGSGIGTGLQS
SGLGSSNLGGFGTSSGFGCGTTGASTFGFGTTDKPSGSLSAGLCASA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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