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Report for CCDS88498.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88498.1 Public Mus musculus 13 Tent2 23 108 98 CCDS HistoryNCBI Gene:100715Re-query CCDS DB by CCDS ID:88498.1Re-query CCDS DB by GeneID:100715See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88498.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000225868.1 ENSMUSP00000153703.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225868.1Link to Ensembl Protein Viewer:ENSMUSP00000153703.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225868Re-query CCDS DB by Protein ID:ENSMUSP00000153703
Original member Current member NCBI NM_001361536.1 NP_001348465.1 Accepted alive Link to Nucleotide Sequence:NM_001361536.1Link to Protein Sequence:NP_001348465.1Re-query CCDS DB by Nucleotide ID:NM_001361536Re-query CCDS DB by Protein ID:NP_001348465Link to BLAST:NP_001348465.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348465.1 480 Q91YI6-2 480 100% 0 0

Chromosomal Locations for CCDS 88498.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 93147591 93147665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93148881 93148960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93150684 93150775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93154925 93155061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93159645 93159688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93167926 93168054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93168391 93168467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93171823 93171892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93174640 93174706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93175519 93175610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93175698 93175812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93184079 93184316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93185808 93185897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 93186303 93186439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGTTCCCAAACTCAATTTTGGGTCGTCCACCCTTCACTCCAACCCACCAACAGCATAATAACTTCTTTG
CTCTCTCACCAACTCTTTATTCACACCAGCAACTTATAGATGCACAATTCAACTTTCAAAATGTAGACTT
GTCTAGAGCTGTGTCCTTACAGCCCCTGACATATGGAACTGTCAGTCCAATACAGACCTCAACATCTCCA
TTATTTCGAGGAAGGAAGAGAATAAGCGATGAAAAAGCTTTTCCTCTTGATGGTAAACGGCAGCGTTTCC
ATTCACCCCACCAAGAGCCAACTATAATCAACCAGCTAGTGCCTTTATCAGGTGACAGAAGATATTCCAT
GCCACCGTTGTTTCACACGCACTATATACCAGATATAGTCAGATGTGTTCCACCTCTTCGAGAAATTCCA
CTGTTAGAACCTCGAGAAATCACACTGCCTGAGGCCAAAGATAAGTTGAGTCAGCAGATACTAGAGTTGT
TTGAAACTTGTCAGCAGCAAGCAAGTGACTTGAAGAAGAAAGAACTCTGTAGAGCACAGCTGCAGAGAGA
GATCCAGCTGCTCTTCCCACAAAGCAGACTTTTTCTCGTTGGATCATCTTTGAATGGATTTGGTGCCCGA
AGCAGTGATGGCGATTTATGCTTAGTTGTTAAAGAAGAACCAGTAAATCAGAAGACTGAAGCACGACATA
TACTCACCTTAGTCCATAAGCACTTCTGTACTAGACTGTCTGGCTATATTGAGAGACCTCAGCTGATTCG
AGCAAAAGTGCCAATTGTGAAGTTCAGGGATAAAGTCAGTTGTGTGGAATTCGACTTAAATGTAAACAAT
ACCGTTGGAATTAGAAATACATTCCTTCTCAGAACCTATGCATACCTTGAAAATCGAGTTCGTCCATTAG
TGCTGGTGATTAAGAAGTGGGCAAGTCACCATGACATCAATGATGCCAGTCGTGGCACATTAAGCAGCTA
TAGTCTTGTATTGATGGTTTTGCACTATTTACAAACCCTACCTGAACCCATCCTTCCATCCCTCCAAAAA
ATTTACCCAGAATCATTTAGTACTTCTGTCCAGCTGCACCTTGTTCATCATGCCCCATGTAATGTCCCTC
CTTACCTCTCAAAGAATGAATCAAGTCTTGGGGACCTCTTACTGGGCTTTCTGAAATATTATGCTACAGA
ATTTGACTGGAACACTCAGATGATTTCAGTTCGTGAAGCCAAAGCCATCCCAAGGCCTGATGATATGGAA
TGGAGAAATAAATACATCTGTGTTGAAGAACCTTTTGATGGAACTAATACCGCCAGAGCTGTGCATGAGA
AGCAGAAGTTTGATATGATCAAGGATCAATTTTTAAAGTCATGGCAGAGATTGAAAAACAAGAGAGATCT
GAACAGTGTGCTGCCTTTGAGAGCTGCTACCCTGAAAAGATAA

Translation (480 aa):
MFPNSILGRPPFTPTHQQHNNFFALSPTLYSHQQLIDAQFNFQNVDLSRAVSLQPLTYGTVSPIQTSTSP
LFRGRKRISDEKAFPLDGKRQRFHSPHQEPTIINQLVPLSGDRRYSMPPLFHTHYIPDIVRCVPPLREIP
LLEPREITLPEAKDKLSQQILELFETCQQQASDLKKKELCRAQLQREIQLLFPQSRLFLVGSSLNGFGAR
SSDGDLCLVVKEEPVNQKTEARHILTLVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNN
TVGIRNTFLLRTYAYLENRVRPLVLVIKKWASHHDINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQK
IYPESFSTSVQLHLVHHAPCNVPPYLSKNESSLGDLLLGFLKYYATEFDWNTQMISVREAKAIPRPDDME
WRNKYICVEEPFDGTNTARAVHEKQKFDMIKDQFLKSWQRLKNKRDLNSVLPLRAATLKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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