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Report for CCDS88379.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88379.1 Public Mus musculus 12 Gstz1 23 108 98 CCDS HistoryNCBI Gene:14874Re-query CCDS DB by CCDS ID:88379.1Re-query CCDS DB by GeneID:14874See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88379.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000220574.1 ENSMUSP00000152321.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220574.1Link to Ensembl Protein Viewer:ENSMUSP00000152321.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220574Re-query CCDS DB by Protein ID:ENSMUSP00000152321
Original member Current member EBI ENSMUST00000222885.1 ENSMUSP00000152343.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000222885.1Link to Ensembl Protein Viewer:ENSMUSP00000152343.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000222885Re-query CCDS DB by Protein ID:ENSMUSP00000152343
Original member Current member NCBI NM_001252555.1 NP_001239484.1 Accepted alive Link to Nucleotide Sequence:NM_001252555.1Link to Protein Sequence:NP_001239484.1Re-query CCDS DB by Nucleotide ID:NM_001252555Re-query CCDS DB by Protein ID:NP_001239484Link to BLAST:NP_001239484.1
Original member Current member NCBI NM_001252556.1 NP_001239485.1 Accepted alive Link to Nucleotide Sequence:NM_001252556.1Link to Protein Sequence:NP_001239485.1Re-query CCDS DB by Nucleotide ID:NM_001252556Re-query CCDS DB by Protein ID:NP_001239485Link to BLAST:NP_001239485.1
Original member Current member NCBI NM_001364307.1 NP_001351236.1 Accepted alive Link to Nucleotide Sequence:NM_001364307.1Link to Protein Sequence:NP_001351236.1Re-query CCDS DB by Nucleotide ID:NM_001364307Re-query CCDS DB by Protein ID:NP_001351236Link to BLAST:NP_001351236.1

Chromosomal Locations for CCDS 88379.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 87159670 87159720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87160050 87160175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87161475 87161553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87162040 87162092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87162988 87163037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87163704 87163830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (486 nt):
ATGAAGCAAGTGCCAGCGCTGAAAATTGATGGAATCACCATTGTCCAGTCACTGGCCATCATGGAGTACC
TGGAAGAGACTCGGCCTATCCCACGGCTCCTGCCTCAGGACCCACAGAAAAGAGCCATCGTGCGCATGAT
TTCTGACCTCATCGCTAGTGGCATCCAGCCCCTTCAGAACCTGTCTGTCCTGAAGCAAGTGGGACAGGAG
AACCAGATGCAATGGGCCCAAAAGGTTATTACTTCCGGCTTTAACGCTCTGGAGAAGATTCTGCAGAGCA
CAGCAGGGAAGTACTGCGTAGGAGATGAGGTATCCATGGCTGATGTGTGCTTAGTACCCCAAGTGGCAAA
TGCTGAAAGGTTCAAGGTGGATCTAAGCCCCTACCCTACCATCAGTCACATCAACAAGGAGCTGCTAGCC
TTAGAGGTTTTCCAAGTGTCTCACCCCCGTCGACAGCCAGATACCCCTGCCGAGCTGAGGACTTAG

Translation (161 aa):
MKQVPALKIDGITIVQSLAIMEYLEETRPIPRLLPQDPQKRAIVRMISDLIASGIQPLQNLSVLKQVGQE
NQMQWAQKVITSGFNALEKILQSTAGKYCVGDEVSMADVCLVPQVANAERFKVDLSPYPTISHINKELLA
LEVFQVSHPRRQPDTPAELRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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