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Report for CCDS88345.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88345.1 Public Mus musculus 12 Togaram1 23 108 98 CCDS HistoryNCBI Gene:328108Re-query CCDS DB by CCDS ID:88345.1Re-query CCDS DB by GeneID:328108See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88345.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000223166.1 ENSMUSP00000152616.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223166.1Link to Ensembl Protein Viewer:ENSMUSP00000152616.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223166Re-query CCDS DB by Protein ID:ENSMUSP00000152616
Original member Current member NCBI NM_001364325.1 NP_001351254.1 Accepted alive Link to Nucleotide Sequence:NM_001364325.1Link to Protein Sequence:NP_001351254.1Re-query CCDS DB by Nucleotide ID:NM_001364325Re-query CCDS DB by Protein ID:NP_001351254Link to BLAST:NP_001351254.1

Chromosomal Locations for CCDS 88345.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 64965977 64968028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 64976695 64976851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 64978169 64978303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 64980583 64980879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 64982446 64982708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 64983328 64983566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 64986393 64986490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 64990941 64991090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 64992545 64992640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 64995506 64995681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 64996892 64997045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65002608 65002761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65006319 65006424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65006875 65007110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65008550 65008708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65011113 65011239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65012835 65012953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65016481 65016670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65019132 65019351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65020314 65020400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 65021440 65021705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5481 nt):
ATGGCGGCCGCGCCTTCCGAGCTGCTCCCGCTGCCGCCTCCTGCGACCCCTGGTTCCTATCGCCTCCTGA
GCCGCTGTCGTCCTTACGCCCCAGGGACTGATGGTCGTCGATCCGGGGGCACCATGAGAGGCGAGAAAAA
CTATTACTGCCGTGGGGCTGCCGGGGATCATGGCTCCTGCCCCGCGACGCCGTCGCCTCTGGCCTCGACC
CTCCTGTTACCGGCGGAGGCTGTTTCAACTAGCTGGTCCGGGCCTGGAAGTGGGCTCTCGGGCGGAGATG
AGGAGGAGACTCGGCTTCTTCAACTCCTGCGCACCGCACCGGATCCTTCCGAGGCGTTCCAGGCTTTGCA
GGCTGCCTTGCCGCGGCGAGGCGGCCGGCTTGGCTTTCCCCGCCGCAAGGAAGCCTTATATCGGGCGCTG
GGCCGAGTGCTTGTGGAAGGCGGCAGTGAGGAGAAGAGGCTCTGCTTGCAGCTTCTCTCGGACGTTCTTC
GGGGTCAGGGCGAGGCGGGTCAGCTGGAAGAGGCCTTCAGTTTAGCGCTTTTGCCTCAGCTCGTTGTCTC
GTTACGAGAAGATAACCCTGCCCTACGGAAAGATGCGCTGCAGATCCTGCATATTTGTCTTAGGCGTAGT
TCTGGGCAGGTCCTGCGAACTCTCATCCAAGGCCTGGAAAGTCCAGATGCCCGGCTTAGAGCTTCCACTG
CGCTGTTGCTCCCTATCTTGTTCACTCCTGAGGATTTGTTGCAGGGTTTGGATCTCACTGAAGTAATAAT
ATCTCTGGCCCGAAAGCTTGGCGATCAGGAGATGGAAGAAGAATCCGAGACAGCCTTCTCTTCACTTCAA
CAAATTGGAGAACGACTTGGTCAAGAGAGGTTTCACTCCTACATCTCGCGTTTGCCTTCTGCACTGAGGA
GGCACTACAATCGCCGCCTGGAGTCCCAGTATGGAAGTCAGGTTCCTTATTATTTGGAGCTAGAAGCCTC
CGGGTTTTCTGAAGATGCTGCCCCGTGTGTAGTGAATCTTTCCAGTAGCAATCTTAAATTTGAGATTATT
CCCCAGGAACTCCATGCAAGACTGTTGGATCAGGAAGATTATAAAAACAGGACTCAGGCTGTTGAAGAAC
TAAAGCAGTTGCTGGGAAAATTTAACCCAAGTTCGACCCCTCATGCTAGTCTCGTTGGTTTCATTAGCTT
ATTGTATAACTTGCTAGACGATTCCAATTTCAAAGTGGTCCATGGCACACTTCAAGTTCTCCATTTGCTG
GTCATTCGCCTGGGAGAGCAGGTGCAACAGTTCTTGGGACCAGTTATAGCGGCTTCTGTGAAAGTGCTGG
CAGACAACAAGTTGGTGATCAAGCAGGAGTACATGAAAATCTTCCTAAAGCTAATGAAAGAAGTGGGTCC
TCAGCGGGTGCTTTCTTTGCTCCTGGAAAACCTTAAACATAAGCATTCCAGAGTACGGGAGGAAGTAGTG
AACATTTGCATCTGTTCCCTCCTGACCTACCCCAGTGAGGATTTTGACTTACCCAAACTGTCCTTTGATC
TTGCTCCAGCTCTTGTGGATAGCAAACGCAGGGTACGCCAGGCAGCTTTAGAGGCCTTTGCTGTTTTGGC
ATCATCAATGGGCTCAGGTAAAACCAATGTTCTTTTTAAAGCTGTAGATACTGTTGAATTGCAGGATAAT
GGCGATGGGGTGATGAATGCCGTGCAGGCCCGATTGGCCAGAAAAACTCTTCCACGGCTAACAGAACAGG
GATTTGTGGAGTATGCAATACTCATGCCGTCTTCGGCCCAGGGCAGGTCAAGCCATTTGGCACATGGAGC
AGATACAGACTGGCTTATGTCCGGTAACAGGACTCAGAGTGCACACTGCTACTGTGGTGACCACACCAGG
GACAGCATGCAACTTTATGGATCCTACAGTCCAACTATCTGTACCCGAAGGGTTTTAAGTGCTGGAAAGG
GGAAAAATAAACTGCCATGGGAAAATGAGCAGCCTGGAGTCATGGGAGAAAACCAGACCTCCAATTCCAA
GGACATTAAAGATACCGAGCAGTTTTCAGCTCATGACCTTATCCCGTCTCCAAAATTAAAGCCCTCTCAA
GGAATGCCAGCCAGTGATGATTTATGTTTTAGCAAAAAAAGGTCATCAAGAAACTTATTTCAGAGTAGTC
GGGACTTTAACTCAGAGTCAGTTCCTACATGTGGTGCTGGTAATACTGCAGATCTTCAGACAAATCTTCC
CGGGAAATGTGGGCAGCTTGGATTGTCACAGATAGGTTGTAGAACTGGCAGTGTGGGTTCTGACTTACAG
TTTTTGGGGACAGCCAATGGCCATCAAGATAAAGTATATGCTAGCATTGATTTTGGCAGTAAGACACAGC
AAACATTTGGTAGTCAATCAGAACGAACTTCTTCATACTCTGGTTCAAATGCAAGTCCAGGATCCTTCAT
CCTTCCATCCTATCCTCTCGCATCACCTCGAACTAGTCCAAAGCACACATCTCCTCTTTCTGTAGCACCA
AAGAAGTCGCAAGATAATTCCATTAGTTTCTCAAATTCTTGGCCTCTTAAGAGCTTCGAAGGACTGTCAA
AGCCAAGTCCACAGAAAAAGCTTGCCAACCAGAAATCATCTGACCCTACAGGAGAAAATTTTCAAGAAAA
AACTACTGCAGTTCAACTTACACCTGCCTTGGTGCGATCACCTTCTTCCCGAAGAGGCCTAAATGGGACC
AAACCTGTTCCTCCCATACCAAGGGGGATAAACCTCTTGCCTGATAAAGCTGACTTAAGCACAATGGGAC
ACATGAAGAAACAGCCTGATGATATTTGGAAAAGTGAAAAAGATAATCTTACAATTGATCTTTCAGAATT
GAATTTCAGAGATAAAGATTTGGATCAGGAAGAGATGCACAGCTCTCTTAGGTCCCTTCGAAATAGTGCA
GCTAAGAAAAGAGCCAAACTCAGTGGCAGCAGCAGCACCTCTGATGTTGACAGTCCCGACTCTGCCATGA
AGCTTGAGCTGACCATTGACTCCCCGTCCCGAGCTTCCTCTCCAAACATCAGCTCTTACAGTGAAAGTGG
AGTGTATAGCCAAGAATCGTTGACCTCTTCTCTTTCTACAACGCCTCAGGGGAAGAGAATAATGTCAGAC
ATATTTCCAACATTTGGATCAAAACCTTGCTCAACAAGGCTTTCTTCTGCAAAGAAAACCTCCCATGCTG
CTGAACAGAGTCCCAGTGCAGGGATAACAACACCCAGTGTAAGCATAATTGGCCAACGTATGAACTATGG
GTTTGGATGTGGTGATTTTGAAGATGATAGGTCACATGACATTTCACCTAGTGCTTTAAAAATACAAAAT
AAGGAACACCCAAGGCAAAAGTATACAAAAGGATTTACTAGGTCATCAAATTTACAGCAGATTTCCAGTT
TTGACTTCACATCTACAAACACCTTATCAGAAGACTCAGTAGTAATTGTTGGAAAAGGTGTATTTGGAAA
TCCAAATTCAGCACCAACAACTTGCAGCCAGCCAGTAATATCCTCTGTGGAAAGTGAGGACACGTTTCCA
GTGAAACCAAGCATTGAACCGCCATCAGGGGTTTATGGAAGAGCAGTCCAGCATAATGCTCCACTATATC
CTGAGGTTGAAAATGACAAAGATACTAAAGTTTCTATTGCAAAATCTACTTATGAAAAAATGAGACAAAA
GAGAAAGGAAGAAAAAGAACTTCTTGATGCTAAAGATTGTGAACGGAAAGAGACGAATCCCTGGGAACGA
ATAAAGCATCTAGGAAGCGAGAAAATGACATCCGAGAATGAACCATCTTCTGGAGTCATTCCACAATATA
AAGAACGAATGTCTTCTGTCACTCACAGTCCAGAGATAATGGATTCATTAGAACTACGGCCATTTTCCAA
ACCAGACATAGCACTTACAGAAGCCTTGCGGCTTTTAGCCGATGAGGACTGGGAGAAGAAGATGGAGGGA
CTGAATTTTGTCCGATGCTTAGCTGCTTTCCATTCCGACCTGTTGAACACAAAATTGCATGAAACAACCT
TTGCAGTAGTTCAAGAGGTGAAAAATTTACGCTCTGGAGTGTCCCGTGCTGCTGTGGTGTGCTTAGGTGA
CCTTTTTACATACCTGAAAAAGAGCATGGATCAAGAACTAGATAGTGCAGTAAGGGCTTTGTTGCACAAA
GCTGGAGAATCGAATACCTTCATAAGGGAAGATGTTGACAAGGCATTGAAAGCTATGGTTAATAATGTAA
CTCCTGCACGTGCAGTCACTTCTCTCATCAATGGAGGACAAAGCCATCTGCACATTGCAGTAAGAAGATG
TACAGCCCAGCACTTGGCAGATGTAGTAGAATGTATGGACCCAGAGCGAATTTCATCTGGAACAAAGGAT
ATGGCTGATCGTTTATTGCCTGCTGCTGCTAAGTTTGCTCAAGACAGCTCACAAGAAACCAGGTATTATG
GTCGAAAGATGCTTTTCCTCATGATGGGTCATCCTAACTTTGAAAAACTACTTGAAAAGTATATCCCATC
TAAAGATTTGCCATATATTAAAGAATCCGTTAAAAATTTACGGCTAAAGGGCTTGGGAGAGATACCTCTA
GACACAGCATCAGCAAAAGGAAGGCGATCTCATCCTGGCAGTGTTGGGAACACAAGGTCATCCTCTGTTT
CTCGAGATGCTTTCAGTTCTTCTGAGAGGGAAGTAACTGAAGTTCGAGAAGTCCCCAGAAAATCAGCTCC
TCGTAATTCCTTAGAAAGTGCTGAGTATATTAAAGTCATAACAGGATTATTAAATGCAAAAGACTTTCGT
GATCGTATTAATGGGATTAAACAACTTTTATCAGACACTGAAAACAATCAGGAGCTTGTTGTAGGCAACA
TTGTGAAGATCTTTGATGCTTTTAAGTCTCGACTTCATGATTCTAACAGCAAAGTGAATCTGGTGGCTCT
AGAAACAATGCACAAAATGATTCCTTTACTTAGAGACAACTTGTCTCCTATAATCAATATGCTGATTCCT
GCAATTGTGGATAACAACCTGAATTCCAAGAATCCAGGCATCTATGCTGCAGCCACAAATGTTGTTCACG
CACTGAGTCAACATGTAGACAATTACTTGCTTCTACAGCCATTTTGCACAAAAGCTCAGTTTCTAAATGG
AAAAGCAAAACAAGATATGACAGAAAAGCTTGCTGATATTGTTACGGAGCTTTATCAAAGGAAGCCTCAT
GCCACAGAACAGAAAGTGCTGGTGGTTTTATGGCACCTCTTAGGGAATATGACACATAGTGGCTCCCTGC
CTGGAGCTGGTGGAAATATTCGAACAGCCACAGCTAAATTATCAAAAGCACTTTTTACCCAGATGGGTCA
GAATCTACTAAATCAGGCTGCATCTCAACCACCACATATCAAAAAGAGTTTAGAGGAATTACTTGATGTG
ACAGTTTTAAGTGAATTATGA

Translation (1826 aa):
MAAAPSELLPLPPPATPGSYRLLSRCRPYAPGTDGRRSGGTMRGEKNYYCRGAAGDHGSCPATPSPLAST
LLLPAEAVSTSWSGPGSGLSGGDEEETRLLQLLRTAPDPSEAFQALQAALPRRGGRLGFPRRKEALYRAL
GRVLVEGGSEEKRLCLQLLSDVLRGQGEAGQLEEAFSLALLPQLVVSLREDNPALRKDALQILHICLRRS
SGQVLRTLIQGLESPDARLRASTALLLPILFTPEDLLQGLDLTEVIISLARKLGDQEMEEESETAFSSLQ
QIGERLGQERFHSYISRLPSALRRHYNRRLESQYGSQVPYYLELEASGFSEDAAPCVVNLSSSNLKFEII
PQELHARLLDQEDYKNRTQAVEELKQLLGKFNPSSTPHASLVGFISLLYNLLDDSNFKVVHGTLQVLHLL
VIRLGEQVQQFLGPVIAASVKVLADNKLVIKQEYMKIFLKLMKEVGPQRVLSLLLENLKHKHSRVREEVV
NICICSLLTYPSEDFDLPKLSFDLAPALVDSKRRVRQAALEAFAVLASSMGSGKTNVLFKAVDTVELQDN
GDGVMNAVQARLARKTLPRLTEQGFVEYAILMPSSAQGRSSHLAHGADTDWLMSGNRTQSAHCYCGDHTR
DSMQLYGSYSPTICTRRVLSAGKGKNKLPWENEQPGVMGENQTSNSKDIKDTEQFSAHDLIPSPKLKPSQ
GMPASDDLCFSKKRSSRNLFQSSRDFNSESVPTCGAGNTADLQTNLPGKCGQLGLSQIGCRTGSVGSDLQ
FLGTANGHQDKVYASIDFGSKTQQTFGSQSERTSSYSGSNASPGSFILPSYPLASPRTSPKHTSPLSVAP
KKSQDNSISFSNSWPLKSFEGLSKPSPQKKLANQKSSDPTGENFQEKTTAVQLTPALVRSPSSRRGLNGT
KPVPPIPRGINLLPDKADLSTMGHMKKQPDDIWKSEKDNLTIDLSELNFRDKDLDQEEMHSSLRSLRNSA
AKKRAKLSGSSSTSDVDSPDSAMKLELTIDSPSRASSPNISSYSESGVYSQESLTSSLSTTPQGKRIMSD
IFPTFGSKPCSTRLSSAKKTSHAAEQSPSAGITTPSVSIIGQRMNYGFGCGDFEDDRSHDISPSALKIQN
KEHPRQKYTKGFTRSSNLQQISSFDFTSTNTLSEDSVVIVGKGVFGNPNSAPTTCSQPVISSVESEDTFP
VKPSIEPPSGVYGRAVQHNAPLYPEVENDKDTKVSIAKSTYEKMRQKRKEEKELLDAKDCERKETNPWER
IKHLGSEKMTSENEPSSGVIPQYKERMSSVTHSPEIMDSLELRPFSKPDIALTEALRLLADEDWEKKMEG
LNFVRCLAAFHSDLLNTKLHETTFAVVQEVKNLRSGVSRAAVVCLGDLFTYLKKSMDQELDSAVRALLHK
AGESNTFIREDVDKALKAMVNNVTPARAVTSLINGGQSHLHIAVRRCTAQHLADVVECMDPERISSGTKD
MADRLLPAAAKFAQDSSQETRYYGRKMLFLMMGHPNFEKLLEKYIPSKDLPYIKESVKNLRLKGLGEIPL
DTASAKGRRSHPGSVGNTRSSSVSRDAFSSSEREVTEVREVPRKSAPRNSLESAEYIKVITGLLNAKDFR
DRINGIKQLLSDTENNQELVVGNIVKIFDAFKSRLHDSNSKVNLVALETMHKMIPLLRDNLSPIINMLIP
AIVDNNLNSKNPGIYAAATNVVHALSQHVDNYLLLQPFCTKAQFLNGKAKQDMTEKLADIVTELYQRKPH
ATEQKVLVVLWHLLGNMTHSGSLPGAGGNIRTATAKLSKALFTQMGQNLLNQAASQPPHIKKSLEELLDV
TVLSEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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