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Report for CCDS88116.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88116.1 Public Mus musculus 10 Mmp19 23 108 98 CCDS HistoryNCBI Gene:58223Re-query CCDS DB by CCDS ID:88116.1Re-query CCDS DB by GeneID:58223See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88116.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000219404.1 ENSMUSP00000151437.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219404.1Link to Ensembl Protein Viewer:ENSMUSP00000151437.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219404Re-query CCDS DB by Protein ID:ENSMUSP00000151437
Original member Current member NCBI NM_001164197.2 NP_001157669.1 Accepted alive Link to Nucleotide Sequence:NM_001164197.2Link to Protein Sequence:NP_001157669.1Re-query CCDS DB by Nucleotide ID:NM_001164197Re-query CCDS DB by Protein ID:NP_001157669Link to BLAST:NP_001157669.1

Chromosomal Locations for CCDS 88116.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128794566 128794656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128794820 128795035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128795560 128795805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128796389 128796514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128798127 128798291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128798436 128798563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128798705 128799100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1368 nt):
ATGGATGACGCCACAAGGGCCCGTATGAAGCAGCCCCGTTGTGGTCTGGAGGATCCCTTCAACCAGAAAT
CTCTTAAATACCTGCTTCTGGGCCACTGGAGAAAGAAGAACTTGACATTCCGCATCTTCAATGTGCCCTC
CACCCTCTCACTTCCCAGAGTCCGAGCAGCCCTGCATCAAGCCTTTAAGTACTGGAGCAGCGTGGCTCCT
CTGACCTTCCGGGAGGTGAAAGCTGGTTGGGCTGACATTCGCCTCTCTTTCCATGGCCGCCAAAGCCTGT
ACTGCTCCAATACCTTTGATGGGCCTGGAAAGGTCCTGGCCCATGCTGACATCCCAGAACTTGGGAGTAT
ACACTTTGATAAAGATGAACTCTGGACTGAGGGGACCTATCAAGGAGTGAACCTGCGCATCATTGCGGCC
CATGAAGTGGGCCATGCCCTAGGACTTGGGCACTCCCGATATACCCAGGCACTCATGGCTCCTGTCTATG
CTGGCTACCAGCCCTTCTTCAAGCTGCATCCAGATGATGTGGCAGGGATCCAGGCTCTCTATGGCAAGAG
GAGCCCAGAGACAAGAGATGAGGAGGAAGAGACCGAGATGCTCACTGTGTCTCCAGTGACTGCAAAACCT
GGTCCCATGCCAAACCCCTGCAGCGGTGAGGTGGACGCCATGGTGCTGGGGCCTCGTGGGAAGACTTATG
CTTTCAAGGGCGACTATGTGTGGACTGTAACAGATTCAGGGCCAGGCCCCTTGTTCCAAATATCTGCCCT
TTGGGAGGGGCTTCCTGGAAACCTAGATGCTGCCGTTTACTCTCCCCGGACACGACGGACTCATTTCTTC
AAGGGAAACAAGGTGTGGCGGTATGTGGATTTCAAGATGTCTCCTGGCTTTCCCATGAAATTCAACAGAG
TAGAGCCCAACCTGGATGCAGCTCTCTACTGGCCTGTTAATCAAAAGGTGTTCCTGTTTAAGGGCTCAGG
ATACTGGCAATGGGATGAACTGGCCAGAACTGACCTTAGCCGCTACCCTAAACCAATCAAGGAACTGTTT
ACTGGAGTGCCAGACCGACCCTCGGCAGCTATGAGCTGGCAAGATGGCCAAGTCTACTTTTTCAAGGGCA
AAGAGTATTGGCGCCTTAACCAGCAACTTCGAGTGGCAAAGGGCTATCCCAGAAATACGACACACTGGAT
GCACTGTGGTTCTCAGACTCCAGACACTAACTCATCAACCGGGGACGTTACTCCTTCAACCACAGACACA
GTCTTGGGTACCACTCCATCAACCATGGGCTCAACCTTGGACATTCCCTCAGCTACAGACTCTGCCTCCC
TCTCATTCTCTGCTAATGTCACCCTGCTAGGGGCCTGA

Translation (455 aa):
MDDATRARMKQPRCGLEDPFNQKSLKYLLLGHWRKKNLTFRIFNVPSTLSLPRVRAALHQAFKYWSSVAP
LTFREVKAGWADIRLSFHGRQSLYCSNTFDGPGKVLAHADIPELGSIHFDKDELWTEGTYQGVNLRIIAA
HEVGHALGLGHSRYTQALMAPVYAGYQPFFKLHPDDVAGIQALYGKRSPETRDEEEETEMLTVSPVTAKP
GPMPNPCSGEVDAMVLGPRGKTYAFKGDYVWTVTDSGPGPLFQISALWEGLPGNLDAAVYSPRTRRTHFF
KGNKVWRYVDFKMSPGFPMKFNRVEPNLDAALYWPVNQKVFLFKGSGYWQWDELARTDLSRYPKPIKELF
TGVPDRPSAAMSWQDGQVYFFKGKEYWRLNQQLRVAKGYPRNTTHWMHCGSQTPDTNSSTGDVTPSTTDT
VLGTTPSTMGSTLDIPSATDSASLSFSANVTLLGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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