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Report for CCDS87968.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87968.1 Public Mus musculus 10 Map7 23 108 98 CCDS HistoryNCBI Gene:17761Re-query CCDS DB by CCDS ID:87968.1Re-query CCDS DB by GeneID:17761See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87968.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020173.15 ENSMUSP00000020173.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020173.15Link to Ensembl Protein Viewer:ENSMUSP00000020173.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000020173Re-query CCDS DB by Protein ID:ENSMUSP00000020173
Original member NCBI NM_008635.2 NP_032661.2 Updated not alive Link to Nucleotide Sequence:NM_008635.2Link to Protein Sequence:NP_032661.2Re-query CCDS DB by Nucleotide ID:NM_008635Re-query CCDS DB by Protein ID:NP_032661
Current member NCBI NM_008635.3 NP_032661.2 Accepted alive Link to Nucleotide Sequence:NM_008635.3Link to Protein Sequence:NP_032661.2Re-query CCDS DB by Nucleotide ID:NM_008635Re-query CCDS DB by Protein ID:NP_032661Link to BLAST:NP_032661.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032661.2 730 O88735-1 730 99.863% 0 1

Chromosomal Locations for CCDS 87968.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 20149014 20149080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20230784 20230882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20233369 20233446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20245270 20245433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20246598 20246715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20250370 20250480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20257184 20257297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20261859 20261983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20266736 20266851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20267123 20267376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20269360 20269588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20273280 20273454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20273779 20273880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20274246 20274296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20274602 20274659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20276176 20276275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20278125 20278345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20279996 20280006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2193 nt):
ATGGCGGAGCAGGGAGCTGGCGGCGACGGCCACAGGGGCGGCGACGGCGCTACGCACAGCGACCCAGCGT
CTGATGGCTATAAAGTACAAGAGAAGAGAACTGCCCCCAGCCGCCCCACTTCTACAGTTTCAGGACAAAC
TAGCAACCACTCAGGAAACAAACCAGATCCCCCACCTGTGCTACGGGTTGATGACCGGCAGCGGCTAGCC
AGAGAACGCCGAGAGGAACGAGAAAAACAGCTAGCTGCACGAGAAACCGTCTGGCTAGAGAGAGAAGAAC
GAGCCCGGCAGCACTATGAGAGACATCTGGAGGCGAGGAAGAAGAAGCTGGAGGACCAACGGCTGAAGGA
GGAGCGGAGGAGGGCTGCGGTGGAGGAGAAGCGGAGGCAGAGGCTGGAGGAGGACAAGGAGCGCCATGAA
GCTGTTGTCCGACGGACGATGGAAAGGAGCCAGAAGCCAAGGCAGAAGTCTAACCGCTGGTCCTGGGGAA
GCCCTCTCCATGGGAGCTCGAGCATCCACAGTGGAGATCCAGACAGGCGCTCAGTTTCCACCATGAATCT
TTCGAAACATGTTGATCCTGTCATTAGCAAGCGGCTCTCCTCCTCGTCTGCAACTTTGCTAAACTCTCCA
GATAGAGCTCGCCGCCTGCAGCTCAGCCCCTGGGAGAGCAGCGTTGTTAGCAGACTTCTGACGCCCACAC
ATTCGTTCCTGGCCAGAAGCAAAAGCACGGCCGCCTTGTCTGGAGACACAGCATCTTGCAGCCCCATCAT
CATGCCCTTCAAAGCTGCACACTCTAGAAACCCAGTGGACCGACCAAAACTCTTTGTAACACCGCCTGAG
GGCTCTGCACGAAGGAGGACCATTCATGGACTAGCGAGCCATAAAAGAGAGCGAGAAAGAGAACACGTTC
CCTTCCACGTTTCCCCGGGCGCCCGCAGGACTCTGTCTCCATCTAATCTCAAAGCGAGGTCACCGGCTCC
AGCCCGCCTTTGGCTCCCATCCAAGTCCATGCCTCATCTGCCTGGTACTCCCCGGCCTGCATCCTCCTTG
CCTCCCGGCTCAGTCAGAGCTGCTTCCGCTCAGGCCCCCTCCTCCTCTCCTGGCAACATCCGGCCTGTCA
AGAGAGAAGTGAAAGTGGAGCCTGAGAAGAAAGACCCTTTACCCGCAGTAAAGAGCAGGGTGCCATTAGT
GAAGGTAGAGGAGGTCACAGTCGAAGAGGGGACACCCGTGAAGCCACCTGAGCCTGCTGCTCCAGCCTCG
GCCCCCATTGCAACCCCAGCCCCTGCTCCAGCTACGGACCCGGCCCCAGTCCCTGCACCATCATCCACTG
TGACTGTCGGTGTAGTTCCTAAGACTTCTGCAGGCACCACCGACCCAGAGGAGGCTACGAGGTTGCTGGC
TGAGAAGAGGCGTCTAGCCAGAGAGCAGAGGGAGAAGGAGGAACGGGAGAGGAAGGAAAAGGAAGAGCTG
GAGAGACAAAAGATAGAGGAATTGGCCCGTAGGGTGGCTGAAGAGCGAAGTCGCAGGGAAGAAGAAGCCC
GCAGGCTGGAAGAGGAGCAGGCTCGAGAGAAAGAGGAGCTGGCGCTGCGTCTGGCTGAGGAGGAGCGGGA
GCGGTGGGAGAGGGAGGAGGTGGAGCGCGTGCAGAAGCAGAAAGAAGAAGAAGCCCGAGCCCGGGAGGAG
GCAGAGAGGGCTCGGCAGGAACGAGAGAAGCATTTCCAGAAAGAAGAGCAGGAACGGCTGGAGAGGAAGA
AGCGACTTGAAGAGATTATGAGAAGAACCAGGAGGACAGAGACCGCTGATAAGAAAACCACTGAGCAAAG
AAATGGTGACATAGCCAAAGGAGTTCTCACTGGAGAGCCAGAAGTACCTGCACTGCCGTGTATGGCCTCT
TCAGGAAACGGAGAGTCTGCAGAGAGCCCACATGGAGTCGCTTTACAGCAATCAGAAGTGACCACAGAGA
GTTCTCCAGATTTGGAAAAACAGCCAAATGAAAACGGAATGTCCATACAAAATGAAAATTTTGAAGAAGT
TATAAACTTACCTGTTGGATCAAAAGCGTCCAGATTAGATGTCACCAATGAGAACCCAGAAATTCCTTTG
AAACCAATTTTGGCCTTTAATGATGAAGGGACACTTGGGCCCCTACCTCAGGTGGATGGTGTGCAGACAC
AACAGACCGCAGAAGTTATATGA

Translation (730 aa):
MAEQGAGGDGHRGGDGATHSDPASDGYKVQEKRTAPSRPTSTVSGQTSNHSGNKPDPPPVLRVDDRQRLA
RERREEREKQLAARETVWLEREERARQHYERHLEARKKKLEDQRLKEERRRAAVEEKRRQRLEEDKERHE
AVVRRTMERSQKPRQKSNRWSWGSPLHGSSSIHSGDPDRRSVSTMNLSKHVDPVISKRLSSSSATLLNSP
DRARRLQLSPWESSVVSRLLTPTHSFLARSKSTAALSGDTASCSPIIMPFKAAHSRNPVDRPKLFVTPPE
GSARRRTIHGLASHKREREREHVPFHVSPGARRTLSPSNLKARSPAPARLWLPSKSMPHLPGTPRPASSL
PPGSVRAASAQAPSSSPGNIRPVKREVKVEPEKKDPLPAVKSRVPLVKVEEVTVEEGTPVKPPEPAAPAS
APIATPAPAPATDPAPVPAPSSTVTVGVVPKTSAGTTDPEEATRLLAEKRRLAREQREKEERERKEKEEL
ERQKIEELARRVAEERSRREEEARRLEEEQAREKEELALRLAEEERERWEREEVERVQKQKEEEARAREE
AERARQEREKHFQKEEQERLERKKRLEEIMRRTRRTETADKKTTEQRNGDIAKGVLTGEPEVPALPCMAS
SGNGESAESPHGVALQQSEVTTESSPDLEKQPNENGMSIQNENFEEVINLPVGSKASRLDVTNENPEIPL
KPILAFNDEGTLGPLPQVDGVQTQQTAEVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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