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Report for CCDS85529.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85529.1 Public Mus musculus 8 Tusc3 23 108 98 CCDS HistoryNCBI Gene:80286Re-query CCDS DB by CCDS ID:85529.1Re-query CCDS DB by GeneID:80286See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 85529.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167992.7 ENSMUSP00000126080.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167992.7Link to Ensembl Protein Viewer:ENSMUSP00000126080.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167992Re-query CCDS DB by Protein ID:ENSMUSP00000126080
Original member Current member NCBI NM_030254.4 NP_084530.3 Accepted alive Link to Nucleotide Sequence:NM_030254.4Link to Protein Sequence:NP_084530.3Re-query CCDS DB by Nucleotide ID:NM_030254Re-query CCDS DB by Protein ID:NP_084530Link to BLAST:NP_084530.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084530.3 347 Q8BTV1 347 100% 0 0

Chromosomal Locations for CCDS 85529.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 39006063 39006200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 39046515 39046684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 39063191 39063308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 39067622 39067762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 39071376 39071516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 39096925 39097014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 39126529 39126592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 39130743 39130817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 39154689 39154779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 39164826 39164841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGAGTGCCAGGGCCGCTCCTTCACGCCGGAGACAGGCGGGCCGCCGGTTGCGCTACCTGCCTACTGGTA
GCTTTCCCTTCCTCCTCTTGCTGCTGCTGCTCTGCATCCAGCTCGGGGGCGGACAGAAGAAAAAGGAGAA
CCTTTTGGCTGAAAAAGTGGAGCAGCTGATGGAATGGAGTTCCAGGCGCTCGATCTTCAGAATGAACGGC
GACAAGTTCCGGAAGTTTGTAAAAGCCCCACCTCGGAACTACTCCATGATCGTCATGTTCACTGCTCTGC
AGCCTCAGCGGCAGTGTTCTGTGTGCAGGCAGGCTAACGAAGAATATCAAATCCTGGCTAATTCCTGGCG
TTATTCATCTGCTTTTTGCAACAAACTGTTTTTTGGAATGGTGGACTATGATGAAGGGACAGATGTTTTT
CAACAGCTCAACATGAACTCCGCTCCCACATTCATGCATTTTCCTTCAAAAGGCAGACCCAAGAGAGCTG
ATACTTTTGACCTTCAACGAATTGGATTTGCAGCTGAGCAGCTAGCAAAATGGATTGCCGACAGGACGGA
TGTTCATATTCGAGTTTTCCGGCCACCCAACTACTCAGGCACCATTGCTTTGGCCCTGTTAGTGTCACTG
GTTGGTGGCTTGCTTTATCTAAGGAGGAACAACTTGGAGTTTATCTATAACAAGACTGGTTGGGCCATGG
TATCTCTGTGTATAGTCTTTGCTATGACGTCTGGCCAGATGTGGAATCATATCCGTGGACCTCCATATGC
TCATAAGAACCCACACAATGGACAAGTGAGCTACATTCATGGAAGCAGCCAGGCTCAGTTTGTGGCAGAG
TCACACATCATTCTAGTACTGAATGCTGCTATCACCATGGGGATGGTTCTTCTAAATGAAGCAGCAACTT
CCAAAGGGGATGTCGGGAAAAGACGCATCATTTGCCTCGTGGGATTGGGCTTGGTGGTCTTCTTCTTCAG
TTTTCTCCTTTCAATATTTCGTTCAAAGTACCATGGCTATCCATATAGCTTTTTAATTAAATGA

Translation (347 aa):
MSARAAPSRRRQAGRRLRYLPTGSFPFLLLLLLLCIQLGGGQKKKENLLAEKVEQLMEWSSRRSIFRMNG
DKFRKFVKAPPRNYSMIVMFTALQPQRQCSVCRQANEEYQILANSWRYSSAFCNKLFFGMVDYDEGTDVF
QQLNMNSAPTFMHFPSKGRPKRADTFDLQRIGFAAEQLAKWIADRTDVHIRVFRPPNYSGTIALALLVSL
VGGLLYLRRNNLEFIYNKTGWAMVSLCIVFAMTSGQMWNHIRGPPYAHKNPHNGQVSYIHGSSQAQFVAE
SHIILVLNAAITMGMVLLNEAATSKGDVGKRRIICLVGLGLVVFFFSFLLSIFRSKYHGYPYSFLIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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