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Report for CCDS85525.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85525.1 Public Mus musculus 8 Tti2 23 108 98 CCDS HistoryNCBI Gene:234138Re-query CCDS DB by CCDS ID:85525.1Re-query CCDS DB by GeneID:234138See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85525.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000210129.1 ENSMUSP00000147956.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210129.1Link to Ensembl Protein Viewer:ENSMUSP00000147956.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210129Re-query CCDS DB by Protein ID:ENSMUSP00000147956
Original member Current member NCBI NM_001199988.1 NP_001186917.1 Accepted alive Link to Nucleotide Sequence:NM_001199988.1Link to Protein Sequence:NP_001186917.1Re-query CCDS DB by Nucleotide ID:NM_001199988Re-query CCDS DB by Protein ID:NP_001186917Link to BLAST:NP_001186917.1

Chromosomal Locations for CCDS 85525.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 31150850 31151499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31153509 31153695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31154214 31154306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31155514 31155701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31155778 31155921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31158593 31158755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31159882 31159987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31161791 31161873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1614 nt):
ATGAAGCTGGACAGTGCCGAAGAGAAGTCGGGGGTCGGCTGCTCCCTGCCTGCAGAGGGCTCTCCCCCGG
CCCTCGAACCAGCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACAGGGCGGCGC
AAGAAATGCGGCTCTTAAAGACCTCGGCGCTTTAATAGAAGCCGCCGAAGGTGACAGATTCTTTGAGGGG
AGTGGGAGTGGGGGATCCCTCCGGGGGATGCCCGAGATCCTGGGGCAGGTGGTGAGAGCCCTGGAGAAGT
TCGCAGCACCCGAGGAGAAGGCAGATGGGGTCGAAGAGCATCCCGAAGTGCCCGAGAAGGCGACTGAAGT
TGGCTCACTGTTTCTAAAGCTGTTGGGGAAGGTTGAAGCTGCCAAGAGTTCTCCCGACTGCCCTGCGTGG
AAGACAGGCCTCCGTCACATGTCAGGACCCGTGTATATTTTTGCCATCACTCACAGATTGAAGCAGCCAT
GGACCAGTCCAGCATCTCAGCATGTTGCTGGTGAGGTGCTGTCTTTATTGCTTAGAGTTACTGAGTGCAG
TTCTGTGGCAGGATTCCTATGCGGAGAAAATGAAGACGATCGAGGGAGATTTGCTGTGGTCTTGGGGCTT
CTTAAGCCCCATTTGAATAAGGAAACCTGGAAGAAGAATCCTGCTGTCAAACATGTTTTCTCGTGGACTC
TCCAACAAGTCACTCAGCCCTGGCTGAATCAGCATCTAGAAAAGATACTTCCTCCGTCTTTGCTCATCTC
AGATGACTATCAGACAGAGAATAAAATCCTGGGTGTCCAGTGCCTCCATCACATTGTGGTTACTGTGCCA
GCTGCGGACTTGCTGCAGTATAACAGAGCCCAGGTCCTGTACCACGCCCTCTTCAATCACCTGTACATGC
CTGAGCACCACCTCATTCAGGCTGTGCTCCTGTGCCTCCTAGACTTGTTCCCTGTCCTAGAGAAGGCTCT
GCACTGGAAGGGAGACACAGCTCGAGTCACCACACACTGTCATGAAGTGTTACAGCTGATCCTCACGCAC
ATGGAACCAGAGCACCGCCTCCTCCTACGGAGGACCTATGCCAGACACCTGCCAGCCTTCGTGAAGAGGT
TGGGGATCCTAACTGTCCGGCACTTGAAGAGGCTGGAGCAAGTTATCCTTGGTTATCTGGAGGTTTATGA
TGAACCAGAAGATGAAACTAGGTTGAAGATCCTGGAAACCCTGAAACTTGTCATGCAGTATACTTGGCCC
AGAATTCCCTGCAGAGTTGTGGTCTTACTGAAGGCTCTCCTGAAACTCATATGTGATATATCGAGGGATA
CGATCCCCACAACCGAGGCCGCTAAGAGTACAATGCTCCAGGAAGCCACAGACTGCCTGATTCTCCTGGA
CCACTGTTCCCAGGGGCAGGTGAAGGGTCTTCTGGCTAAAATTGCAGTATCCTGTGAAGACAGCACAGTG
GTGAGCTGCATCAGGAAGGTGCAGCAGGGCTCTGCAGATTCTCCTGGCGATGACACTGAAGGGCCTTGTC
GAAGGCATGGATGGGGAAGTTGTAGATGTCGCCATACTGAAGAAGAAACACAGACCACCTTTAACTATGC
CTGA

Translation (537 aa):
MKLDSAEEKSGVGCSLPAEGSPPALEPAFSKILNRLSRPKSSGQGGARNAALKDLGALIEAAEGDRFFEG
SGSGGSLRGMPEILGQVVRALEKFAAPEEKADGVEEHPEVPEKATEVGSLFLKLLGKVEAAKSSPDCPAW
KTGLRHMSGPVYIFAITHRLKQPWTSPASQHVAGEVLSLLLRVTECSSVAGFLCGENEDDRGRFAVVLGL
LKPHLNKETWKKNPAVKHVFSWTLQQVTQPWLNQHLEKILPPSLLISDDYQTENKILGVQCLHHIVVTVP
AADLLQYNRAQVLYHALFNHLYMPEHHLIQAVLLCLLDLFPVLEKALHWKGDTARVTTHCHEVLQLILTH
MEPEHRLLLRRTYARHLPAFVKRLGILTVRHLKRLEQVILGYLEVYDEPEDETRLKILETLKLVMQYTWP
RIPCRVVVLLKALLKLICDISRDTIPTTEAAKSTMLQEATDCLILLDHCSQGQVKGLLAKIAVSCEDSTV
VSCIRKVQQGSADSPGDDTEGPCRRHGWGSCRCRHTEEETQTTFNYA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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