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Report for CCDS85425.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85425.1 Public Mus musculus 7 Fus 23 108 98 CCDS HistoryNCBI Gene:233908Re-query CCDS DB by CCDS ID:85425.1Re-query CCDS DB by GeneID:233908See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85425.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077609.11 ENSMUSP00000076801.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077609.11Link to Ensembl Protein Viewer:ENSMUSP00000076801.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000077609Re-query CCDS DB by Protein ID:ENSMUSP00000076801
Original member Current member NCBI NM_001347649.1 NP_001334578.1 Accepted alive Link to Nucleotide Sequence:NM_001347649.1Link to Protein Sequence:NP_001334578.1Re-query CCDS DB by Nucleotide ID:NM_001347649Re-query CCDS DB by Protein ID:NP_001334578Link to BLAST:NP_001334578.1

Chromosomal Locations for CCDS 85425.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 127967565 127967577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127969562 127969586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127969717 127969871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127971841 127971982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127972117 127972304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127972554 127972770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127974400 127974434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127975888 127975920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127977218 127977321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127978141 127978270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127979892 127979993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127980123 127980246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127981191 127981291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127981411 127981555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127981791 127981830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGGCTTCAAACGACTATACCCAACAAGCAACTCAAAGCTACGGGGCCTATCCTACCCAGCCTGGGCAGG
GCTACTCCCAACAGAGCAGTCAGCCCTATGGCCAACAGAGTTACAGTGGTTATGGCCAGTCAGCTGACAC
TTCAGGATACGGCCAGAGCAGCTATGGTTCTTCTTATGGACAGACCCAAAACAGCTATGGAACTCAGTCA
GCTCCCCAGGGATATGGTTCCACTGGAGGCTATGGCAGCAGCCAAAGTTCACAATCTTCTTATGGGCAGC
AGTCCTCCTACCCTGGCTATGGCCAACAGCCAGCTCCTAGCAGCACCTCAGGAAGTTATGGTGGCAGTTC
TCAGAGCAGCAGCTATGGGCAACCCCAGAGTGGAGGTTATGGTCAACAGTCTGGCTATGGTGGACAGCAA
CAAAGCTACGGACAACAACAAAGCTCCTATAACCCACCTCAGGGTTATGGACAACAGAACCAGTACAACA
GTAGCAGTGGAGGTGGTGGAGGGGGTGGTGGAGGCAACTATGGCCAAGATCAGTCCTCTATGAGTGGTGG
CGGTGGCGGTGGTGGTTATGGCAATCAGGACCAGAGTGGTGGCGGCGGCGGCGGCTACGGGGGAGGCCAA
CAGGATCGTGGGGGCCGAGGCAGGGGCGGTGGAGGTGGTTACAACCGAAGCAGTGGTGGCTATGAACCCA
GAGGCCGTGGAGGTGGCCGAGGAGGCAGAGGCGGCATGGGCGGAAGTGACCGCGGTGGCTTCAATAAATT
TGGTGGTCCTCGGGATCAAGGATCTCGTCATGATTCTGAACAGGATAATTCAGACAACAATACCATCTTC
GTGCAAGGCCTAGGCGAGAATGTTACAATTGAATCTGTGGCTGATTACTTCAAGCAGATTGGAATTATTA
AGACAAACAAGAAAACTGGACAGCCTATGATTAATTTGTACACAGACAGGGAAACTGGCAAGTTGAAGGG
TGAGGCAACAGTTTCATTTGATGACCCACCTTCTGCTAAAGCAGCTATCGACTGGTTTGATGGTAAAGAA
TTCTCTGGGAATCCTATTAAAGTTTCATTTGCTACCCGCCGAGCTGACTTCAATCGGGGTGGTGGAAATG
GTCGCGGAGGCCGAGGGCGAGGAGGACCCATGGGCCGTGGAGGCTATGGAGGAGGTGGCAGTGGTGGTGG
TGGCCGGGGAGGATTCCCCAGTGGAGGTGGTGGAGGTGGAGGACAGCAACGAGCTGGAGACTGGAAGTGT
CCTAATCCTACATGTGAGAACATGAACTTCTCTTGGAGAAATGAATGCAACCAGTGTAAGGCACCTAAGC
CAGATGGCCCAGGAGGGGGACCAGGAGGCTCTCATATGGGGGGAAACTATGGAGATGATCGACGTGGCAG
AGGAGGATATGACCGGGGCGGCTACCGGGGCCGAGGAGGGGACCGTGGGGGCTTCAGAGGGGGCCGGGGT
GGTGGGGACAGAGGCGGTTTTGGCCCTGGCAAGATGGACTCCAGGGGCGAGCACAGACAGGATCGCAGGG
AGAGGCCATATTAG

Translation (517 aa):
MASNDYTQQATQSYGAYPTQPGQGYSQQSSQPYGQQSYSGYGQSADTSGYGQSSYGSSYGQTQNSYGTQS
APQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGGSSQSSSYGQPQSGGYGQQSGYGGQQ
QSYGQQQSSYNPPQGYGQQNQYNSSSGGGGGGGGGNYGQDQSSMSGGGGGGGYGNQDQSGGGGGGYGGGQ
QDRGGRGRGGGGGYNRSSGGYEPRGRGGGRGGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSDNNTIF
VQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE
FSGNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKC
PNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMGGNYGDDRRGRGGYDRGGYRGRGGDRGGFRGGRG
GGDRGGFGPGKMDSRGEHRQDRRERPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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