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Report for CCDS85365.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85365.1 Public Mus musculus 7 Trim68 23 108 98 CCDS HistoryNCBI Gene:101700Re-query CCDS DB by CCDS ID:85365.1Re-query CCDS DB by GeneID:101700See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85365.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000210855.1 ENSMUSP00000147991.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210855.1Link to Ensembl Protein Viewer:ENSMUSP00000147991.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210855Re-query CCDS DB by Protein ID:ENSMUSP00000147991
Original member Current member NCBI NM_001307998.2 NP_001294927.1 Accepted alive Link to Nucleotide Sequence:NM_001307998.2Link to Protein Sequence:NP_001294927.1Re-query CCDS DB by Nucleotide ID:NM_001307998Re-query CCDS DB by Protein ID:NP_001294927Link to BLAST:NP_001294927.1

Chromosomal Locations for CCDS 85365.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102678738 102678837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102679036 102679136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102680137 102680397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102681663 102681758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102684048 102684473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (984 nt):
ATGGATCCTGCAGTGTTAATGGAAGCCATTGTGGAAGAAGTGAACTGTCCTATCTGTATGACCTTCCTCA
GG
GAACCTGTGAGCATCAGCTGTGGCCACACTTTCTGCCACAGCTGCCTCTCTGGACTCTGGAAGCTCCC
A
GGAGAGTCCCAGAACTTGAGCTACACCTGTCCCCTTTGTCGAGCTCCCGTGAAGCCAAGGAAACTCCGT
CCC
AATTGGCAGCTGGCCAGTGTTGTAGACAAGGTCCGTCTGCTAGGCTTCTGTATGGAAATGGGACTAA
AG
ACCGATGTGTGTGATCTCCACAAGGAACAGCTAACCATGTTCTGCAAGGAGGATGATATGGTAACCTG
C
GAGGCCTGTAAGCAGTCCCCAGAGCATGAAGCCCACAGTGTTGTACCCATAAAGGATGTTGCCTGGGAA
TAT
AAGTGGAAACTCCAGCAGGCTCTGGAGCATCTGAGGAAAGAACAGGAAGAAGCCTGGAAACTGGAAG
TC
AGTGAGAAGGAACAGGCTGCCATCTGGAAGACACAGATGGAAAGACGAAAGCAGAGCATCCGATGGGA
G
TTTGAAAAATATCGGCAGTTATTAAAGGAAAAGGAGCTGCCCTGCCAGCAGGCAGAAGAGGAGGCAGCT
GCA
GCTCAGGCTAGCCTCGAGCAGGAGAAGGGAGAGACAGCAAGCAAACTGGAGTTGAGGCGCGAGGCGA
TC
ATCCGGCAGAGCCAGGTCCTGTGGAGCATGATTGTGGAGCTGGAAGAGAGATCCCAGAGACCTGTGCG
C
TGGATGCTGCAGGAGCGAGTCTTGGACCCTGCAGCAGCTAGAGCCAATCTCCTTGGAGCTGAAGACAGA
TTG
CCGTGTGCTAGGACTAAGAGAGACCCTGAAGACATTTGCAGTGGATGTGCGTCTAGATCCAGACACA
GC
TTACTCCCGCCTTGTCGTTTCCAAGGACAGAAAAAGTGTGCACTATGGAGTCACCCAGCAGAACCTGC
C
TGA


Translation (327 aa):
MDPAVLMEAIVEEVNCPICMTFLREPVSISCGHTFCHSCLSGLWKLPGESQNLSYTCPLCRAPVKPRKLR
P
NWQLASVVDKVRLLGFCMEMGLKTDVCDLHKEQLTMFCKEDDMVTCEACKQSPEHEAHSVVPIKDVAWE
Y
K
WKLQQALEHLRKEQEEAWKLEVSEKEQAAIWKTQMERRKQSIRWEFEKYRQLLKEKELPCQQAEEEAA
A
AQASLEQEKGETASKLELRREAIIRQSQVLWSMIVELEERSQRPVRWMLQ
ERVLDPAAARANLLGAEDR
L
PCARTKRDPEDIC
SGCASRSRHSLLPPCRFQGQKKCALWSHPAEPA



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser