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Report for CCDS85059.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85059.1 Public Mus musculus 6 Prdm5 23 108 98 CCDS HistoryNCBI Gene:70779Re-query CCDS DB by CCDS ID:85059.1Re-query CCDS DB by GeneID:70779See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85059.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031973.12 ENSMUSP00000031973.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031973.12Link to Ensembl Protein Viewer:ENSMUSP00000031973.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031973Re-query CCDS DB by Protein ID:ENSMUSP00000031973
Original member Current member NCBI NM_029549.1 NP_083825.1 Accepted alive Link to Nucleotide Sequence:NM_029549.1Link to Protein Sequence:NP_083825.1Re-query CCDS DB by Nucleotide ID:NM_029549Re-query CCDS DB by Protein ID:NP_083825Link to BLAST:NP_083825.1

Chromosomal Locations for CCDS 85059.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 65779101 65779193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65794300 65794383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65831249 65831371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65869181 65869265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65870312 65870469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65881049 65881142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65883523 65883683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65886085 65886178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65901774 65901859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65927917 65928021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 65935970 65936134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGCTGGGCATGTACGTACCAGACAGGTTCGCCCTGAAGTCGTCCCGGGTCCAGGACGGGATGGGGCTCT
ACACGGCCCGCCGCGTGCGCAAGGGTGAAAAATTTGGACCCTTCGCTGGGGAGAAGCGAATGCCTGAAGA
CTTGGATGAAAATATGGACTACAGACTGATGTGGGAGGTACGTGGGAGCAAGGGAGAAGTTCTGTATATT
TTGGATGCTACCAACCCAAGACACTCCAACTGGCTTCGCTTTGTTCACGAGGCACCATCTCAGGAGCGGA
AGAACCTGGCTGCCATTCAAATTCATGAGATATTTGATTGTCAAGAATGTATGAAAAAGTTTATTTCTGC
TAATCAGCTGAAGCGTCACATGATTACCCACTCAGAAAAGCGGCCTTATAACTGTGAGATCTGTAACAAG
TCCTTCAAGAGGCTCGATCAAGTGGGCGCCCACAAAGTGATCCACAGTGAGGACAAACCCTACCAGTGCA
AGCTCTGTGGCAAGGGCTTTGCTCACAGAAACGTTTACAAGAACCACAAGAAGACCCACTCCGAGGAGAG
ACCTTTCCAGTGTGATGCATGTAAAGCCTTGTTCCGCACGCCCTTTTCTCTGCAGAGACACCTGTTAATC
CACAACAGTGAGAGGACTTTTAAGTGTCACCACTGTGATGCCACATTTAAAAGGAAGGATACATTAAACG
TTCATGTCCAGGTGGTCCATGAAAGACACAAGAAGTACCGATGTGAGCTGTGCAATAAGGCCTTTGTCAC
ACCTTCAGTGCTTAGGAGTCATAAGAAGACACACACAGGAGAAAAGGAGAAAGTCTGCCCATATTGTGGC
CAGAAATTTGCCAGCAGTGGGACCCTGAGAGTTCACATCCGGAGCCACACAGGTGAGCGCCCCTATCAAT
GCCCGTACTGTGAAAAAGGTTTCAGTAAAAATGACGGACTGAAGATGCACATTCGTACTCACACCAGGGA
GAAGCCCTACCAGTGCTCAGAGTGCAGCAAGGCCTTCAGCCAGAAGCGGGGCCTCGATGAACACAAGAGG
ACACACACAGGAGAAAAGCCTTTTCAGTGTGACGTATGTGACTTGGCTTTTAGCCTGAAGAAAATGCTTA
TTCGACACAAGATGACACACAATCCTAACCGTCCGATGGCAGAGTGCCATTTCTGCCATAAGAAGTTTAC
AAGAAATGACTACCTCAAAGTGCACATGGACAACATCCATGGGGTAGCTGACAGCTAA

Translation (415 aa):
MLGMYVPDRFALKSSRVQDGMGLYTARRVRKGEKFGPFAGEKRMPEDLDENMDYRLMWEVRGSKGEVLYI
LDATNPRHSNWLRFVHEAPSQERKNLAAIQIHEIFDCQECMKKFISANQLKRHMITHSEKRPYNCEICNK
SFKRLDQVGAHKVIHSEDKPYQCKLCGKGFAHRNVYKNHKKTHSEERPFQCDACKALFRTPFSLQRHLLI
HNSERTFKCHHCDATFKRKDTLNVHVQVVHERHKKYRCELCNKAFVTPSVLRSHKKTHTGEKEKVCPYCG
QKFASSGTLRVHIRSHTGERPYQCPYCEKGFSKNDGLKMHIRTHTREKPYQCSECSKAFSQKRGLDEHKR
THTGEKPFQCDVCDLAFSLKKMLIRHKMTHNPNRPMAECHFCHKKFTRNDYLKVHMDNIHGVADS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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