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Report for CCDS85003.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85003.1 Public Mus musculus 5 Gm6370 23 108 98 CCDS HistoryNCBI Gene:622924Re-query CCDS DB by CCDS ID:85003.1Re-query CCDS DB by GeneID:622924See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 85003.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110611.7 ENSMUSP00000106241.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110611.7Link to Ensembl Protein Viewer:ENSMUSP00000106241.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000110611Re-query CCDS DB by Protein ID:ENSMUSP00000106241
Original member Current member NCBI NM_001243110.1 NP_001230039.1 Accepted alive Link to Nucleotide Sequence:NM_001243110.1Link to Protein Sequence:NP_001230039.1Re-query CCDS DB by Nucleotide ID:NM_001243110Re-query CCDS DB by Protein ID:NP_001230039Link to BLAST:NP_001230039.1

Chromosomal Locations for CCDS 85003.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 146491391 146491522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146491706 146491908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146492447 146492494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146493139 146493332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146493596 146493954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGTTCTCCTGTTTCCAGGGTTCCAGAGGCTCCGGCCACAAAAAAGCCAAGAGCGGTTTCCTTGTTCGCT
TTTGGAGACGTTTGATTCGCCCTCTGACACACTTCAGGCATGCTTCCCACAGTGAGCCCAAGGTCTGTTC
TCAAAATGAACAGGAGCCAGACTCTCTGCCCAAGCGCCCCCAGTTCAACTATGACAGCCAAGAATACGTG
GTACAAATGATCCACTACATTCCAGCTGCTATTCAGAAACGTGACCACATCTGTATCACCATATTTCTTG
GCGTCTACCGAACGTATGCCAGCACTTGGGAGGTGCTGGACCTGCTGATGAGAACGTATGCATCCTTCCG
GCCTGACTGTATAAAGGACCAGCAAACTAAGAGAGCCATATTCAGGTTTCTGTTCGGCTGGTTTAAGAAA
TACCCCCAGGATTTTTATGAGTCCCCAGACCTGGCTGTTGTGAGGCAGTTCATTGACTATGTGAAGCGCA
ATGTGCCTTCCTCAGATGTAGATAGAGCCAGGGAGCTGCTCTCCGTGCTGGAAGATCAGGAGGCAATAGA
GCTACAGATTGAGCAAGCTCCAGAGCCCTCAGAGCAGGATGCCTCTGGGAGGCAGGAGACTCTGGCTCCG
AGGCCAGCTTCTGAGACAGAGCCACAGGGAGACAAGCAACACCGAGAGGATGCTGAGCTTGTGAAAGGAG
CAGTTCTGGATCCCTTTAAACCAAAAGCCACAATAGAGCTGCATCCGACTTTACATCAAGCTGTGCCCAC
ATCAGATGGTTCACTCTCACCTGTAGATGTTACTGCAGATGAGGCGACAGGTGTGGCTGCAGATGTTGCT
GCAGATGTTTCACCTGCCAGGCAATTATTTGTGTCTTACACTGTGCAGTTAGGTACACCAGATTTCATTT
TCCCTCTGCCTGAGGTTGACATATAG

Translation (311 aa):
MFSCFQGSRGSGHKKAKSGFLVRFWRRLIRPLTHFRHASHSEPKVCSQNEQEPDSLPKRPQFNYDSQEYV
VQMIHYIPAAIQKRDHICITIFLGVYRTYASTWEVLDLLMRTYASFRPDCIKDQQTKRAIFRFLFGWFKK
YPQDFYESPDLAVVRQFIDYVKRNVPSSDVDRARELLSVLEDQEAIELQIEQAPEPSEQDASGRQETLAP
RPASETEPQGDKQHREDAELVKGAVLDPFKPKATIELHPTLHQAVPTSDGSLSPVDVTADEATGVAADVA
ADVSPARQLFVSYTVQLGTPDFIFPLPEVDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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