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Report for CCDS84728.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84728.1 Public Mus musculus 4 Tgfbr1 23 108 98 CCDS HistoryNCBI Gene:21812Re-query CCDS DB by CCDS ID:84728.1Re-query CCDS DB by GeneID:21812See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84728.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044234.13 ENSMUSP00000048501.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044234.13Link to Ensembl Protein Viewer:ENSMUSP00000048501.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000044234Re-query CCDS DB by Protein ID:ENSMUSP00000048501
Original member NCBI NM_001312868.1 NP_001299797.1 Updated not alive Link to Nucleotide Sequence:NM_001312868.1Link to Protein Sequence:NP_001299797.1Re-query CCDS DB by Nucleotide ID:NM_001312868Re-query CCDS DB by Protein ID:NP_001299797
Current member NCBI NM_001312868.2 NP_001299797.1 Accepted alive Link to Nucleotide Sequence:NM_001312868.2Link to Protein Sequence:NP_001299797.1Re-query CCDS DB by Nucleotide ID:NM_001312868Re-query CCDS DB by Protein ID:NP_001299797Link to BLAST:NP_001299797.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001299797.1 499 Q64729-2 499 100% 0 0

Chromosomal Locations for CCDS 84728.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 47353312 47353396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47383749 47383994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47393259 47393489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47396355 47396585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47402803 47402970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47403370 47403526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47405529 47405653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47406922 47407052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47410652 47410777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGGAGGCGGCGGCCGCTGCTCCACGTCGTCCGCAGCTCCTCATCGTGTTGGTGGCGGCGGCGACGCTGC
TCCCGGGGGCGAAGGCATTACAGTGTTTCTGCCACCTCTGTACAAAGGATAATTTTACCTGTGAGACAGA
TGGTCTTTGCTTTGTCTCAGTCACTGAGACCACAGACAAAGTTATACACAATAGTATGTGTATAGCTGAA
ATTGACCTAATTCCTCGAGACAGGCCATTTGTATGTGCACCATCTTCAAAAACAGGGGCAGTTACTACAA
CATATTGCTGCAATCAGGACCACTGCAATAAAATAGAACTCCCAACTACAGAAAAGCAGTCAGCTGGCCT
TGGTCCTGTGGAGCTGGCAGCTGTCATTGCTGGTCCAGTCTGCTTCGTCTGCATTGCACTTATGCTGATG
GTCTATATCTGCCATAACCGCACTGTCATTCACCACCGTGTGCCAAATGAAGAGGATCCATCACTAGATC
GCCCTTTCATTTCAGAGGGCACCACCTTAAAAGATTTAATTTATGATATGACAACATCAGGGTCTGGATC
AGGTTTACCACTGCTTGTTCAAAGAACAATTGCCAGGACCATTGTGTTACAAGAAAGCATTGGCAAAGGT
CGGTTTGGAGAAGTTTGGCGAGGCAAATGGCGGGGAGAAGAAGTTGCTGTGAAGATATTCTCTTCTAGAG
AAGAGCGTTCATGGTTCCGAGAGGCAGAGATTTATCAGACTGTAATGTTACGCCATGAAAATATCCTGGG
ATTTATAGCAGCAGACAACAAAGACAATGGGACATGGACGCAGCTGTGGTTGGTGTCAGATTATCATGAG
CATGGATCCCTTTTCGATTACTTGAATAGATACACTGTTACTGTGGAAGGAATGATCAAGCTTGCTCTGT
CCACAGCAAGTGGTCTTGCCCATCTTCACATGGAGATTGTTGGTACCCAAGGAAAACCAGCTATTGCCCA
TAGAGATTTGAAATCAAAGAATATCTTGGTGAAGAAAAATGGAACCTGTTGTATTGCAGACTTGGGACTT
GCTGTGAGACATGATTCTGCCACAGATACAATTGATATTGCTCCAAACCACAGAGTAGGCACTAAAAGGT
ACATGGCCCCTGAAGTTCTAGATGATTCCATAAATATGAAACATTTTGAATCCTTCAAACGCGCTGACAT
CTATGCAATGGGCTTAGTGTTCTGGGAAATTGCTCGACGCTGTTCTATTGGTGGAATCCATGAAGACTAT
CAGTTGCCTTATTATGATCTTGTACCTTCTGATCCATCGGTTGAAGAAATGAGAAAAGTAGTTTGCGAAC
AGAAGTTAAGGCCAAATATTCCAAACAGATGGCAGAGCTGTGAGGCCTTGAGAGTGATGGCTAAAATTAT
GAGAGAATGCTGGTATGCCAATGGAGCAGCAAGGCTGACAGCTTTGCGAATTAAAAAAACATTGTCACAA
CTCAGCCAACAGGAAGGCATCAAAATGTAA

Translation (499 aa):
MEAAAAAPRRPQLLIVLVAAATLLPGAKALQCFCHLCTKDNFTCETDGLCFVSVTETTDKVIHNSMCIAE
IDLIPRDRPFVCAPSSKTGAVTTTYCCNQDHCNKIELPTTEKQSAGLGPVELAAVIAGPVCFVCIALMLM
VYICHNRTVIHHRVPNEEDPSLDRPFISEGTTLKDLIYDMTTSGSGSGLPLLVQRTIARTIVLQESIGKG
RFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHE
HGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL
AVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDY
QLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQ
LSQQEGIKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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