NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS84248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84248.1 Public Mus musculus 16 Arl6 23 108 98 CCDS HistoryNCBI Gene:56297Re-query CCDS DB by CCDS ID:84248.1Re-query CCDS DB by GeneID:56297See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84248.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099646.9 ENSMUSP00000097238.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099646.9Link to Ensembl Protein Viewer:ENSMUSP00000097238.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099646Re-query CCDS DB by Protein ID:ENSMUSP00000097238
Original member Current member EBI ENSMUST00000118438.7 ENSMUSP00000113127.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118438.7Link to Ensembl Protein Viewer:ENSMUSP00000113127.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118438Re-query CCDS DB by Protein ID:ENSMUSP00000113127
Original member Current member NCBI NM_001347244.1 NP_001334173.1 Accepted alive Link to Nucleotide Sequence:NM_001347244.1Link to Protein Sequence:NP_001334173.1Re-query CCDS DB by Nucleotide ID:NM_001347244Re-query CCDS DB by Protein ID:NP_001334173Link to BLAST:NP_001334173.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334173.1 193 O88848-2 193 100% 0 0

Chromosomal Locations for CCDS 84248.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 59613811 59613844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59618666 59618678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59618795 59618850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59621219 59621348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59623021 59623115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59623878 59623946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59624280 59624341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 59632311 59632433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGGGCTTGCTGGACAGACTTTCAGGTTTGCTTGGCCTGAAGAAGAAGGAGGTTCATGTTCTGTGCCTGG
GGCTGGATAACAGTGGGAAAACCACAATCATTAACAAGCTGAAGCCTTCCAACGCTCAATCTCAAGATAT
AGTTCCAACCATAGGATTTAGCATAGAGAAATTCAAGTCCTCCAGTTTGTCTTTTACAGTGTTTGACATG
TCAGGTCAAGGAAGGTACAGGAATCTCTGGGAACACTATTATAAAGATGGACAAGCCATTATTTTTGTCA
TTGATAGTAGTGATAAGTTAAGAATGGTTGTGGCCAAAGAAGAGCTTGATACCCTTCTGAATCACCCAGA
TATTAAGCACCGTCGAATTCCAATCTTGTTCTTTGCAAACAAAATGGACCTTAGAGACTCAGTGACCTCT
GTGAAAGTGTCTCAGTTGCTGTGCTTAGAGAGCATTAAAGACAAGCCGTGGCATATTTGTGCTAGTGACG
CCATCAAAGGAGAAGGCCTGCAGGAAGGCGTGGACTGGCTCCAAGAAAAAACAGTACAATCAGATCCAAG
CTGTGAAGACGTGAAGAGATAG

Translation (193 aa):
MGLLDRLSGLLGLKKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQDIVPTIGFSIEKFKSSSLSFTVFDM
SGQGRYRNLWEHYYKDGQAIIFVIDSSDKLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDSVTS
VKVSQLLCLESIKDKPWHICASDAIKGEGLQEGVDWLQEKTVQSDPSCEDVKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH