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Report for CCDS84052.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
84052.1 |
Public |
Mus musculus |
13 |
Pde8b |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:218461](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:84052.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:218461](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 13 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 84052.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000162153.8 |
ENSMUSP00000124704.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000162153.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000124704.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000162153](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000124704](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_001346782.1 |
NP_001333711.1 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_001346782.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001333711.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001346782](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001333711](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001346782.2 |
NP_001333711.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001346782.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001333711.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001346782](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001333711](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001333711.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 84052.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2343 nt): ATGGACCAGCAGCAGAGCGTGCGCCAGGTGTCTTCTGCAGAGGTGCGCATTGGGCCCATGAGACTGACAC AGGACCCTATCCAGGTTCTGCTAATCTTCGCAAAGGAAGATAGCCAGAGTGATGGCTTCTGGTGGGCCTG TGACAGAGCTGGCTACAGATGCAACATCGCTCGCACTCCAGAGTCGGCCCTCGAGTGCTTTCTGGACAAG CATCATGAAATTATTGTGATCGATCACAGGCAGAGCCGGAACTTTGATGCAGAAGCCGTGTGCAGGTCAA TCCGGGCCACGAACCCCTCTGAGCACACGGTGATCCTGGCTGTCGTTTCACAAGCATCTGATGACCATGA AGAGGCCTCAGTCCTTCCTCTTCTTCATGCAGGCTTCAACCGGAGATTTATGGAGAACAGCAGCATAATT GCTTGCTATAATGAACTGATTCAAATAGAACACGGGGAAGTTCGCTCACAGTTCAAATTACGGGCCTGTA ATTCAGTGTTTACAGCGTTAGACCACTGTCACGAAGCCATAGAAATAACAAGTGATGACCATGTGATTCA GTATGTCAACCCTGCCTTTGAGAGGATGATGGGCTACCACAAAGGGGAGCTCCTGGGGAAGGAACTCGCT GACCTACCTAAGAGTGACAAGAACCGGGCAGACCTCCTGGACACCATCAACACGTGCATCAAGAAGGGAA AGGAGTGGCAGGGGGTTTACTATGCCAGACGGAAATCCGGGGACAGCATCCAACAGCACGTGAAGATCAC CCCAGTGATTGGCCAAGGAGGGAAAATTAGGCACTTTGTCTCCCTCAAGAAGCTGTGCTGTACCACTGAC AGTAACAAGCAGATTCACCGGATTCATCGTGACTCCGGGGACAACTCTCAGACAGAGCCTCATTCGTTCA GACACAAGAGCAGGAGGAAAGAGTCCATTGATGTGAAATCAATATCTTCTCGGGGCAGTGATGCGCCAAG CCTACAGAATCGCCGCTACCCCTCCATGGCCAGGATCCACTCCATGACCATTGAGGCTCCCATCACAAAG GTTATAAATATAATCAATGCAGCTCAGGAGAACAGCCCAGTTACAGTAGCAGAGGCCTTGGACAGAGTCC TAGAAATTTTACGGACCACAGAACTGTATTCCCCTCAGCTGGGAACCAAAGATGAGGATCCCCACACCAG TGACCTTGTTGGGGGCCTGATGACTGATGGCTTGAGGAGACTGTCAGGGAACGAGTATGTGTTTACAAAG AATGTGCACCACAGTCACAGTCACCTCTCGATGCCCATCACCATCAATGATGTCCCCCCAAGTATCGCCC AGCTCCTTGATAATGAGGAAAGCTGGGACTTCAACATCTTTGAATTGGAAGCCGTTACACATAAAAGGCC ACTTGTGTACCTGGGCTTAAAGGTCTTCTCTCGGTTTGGAGTATGTGAATTTTTAAACTGTACTGAAACC ACTCTTCGGGCCTGGCTGCAAGTGATTGAAGCCAACTACCACTCCTCCAACGCCTACCACAACTCCACCC ATGCTGCCGATGTACTGCATGCCACGGCTTTCTTCCTTGGAAAGGAAAGAGTGAAGGGAAGCCTGGACCA GCTGGATGAGGTGGCTGCTCTGATTGCTGCCACAGTCCACGACGTGGATCACCCCGGAAGGACCAACTCT TTCCTGTGCAACGCCGGCAGCGAGCTCGCTGTGCTCTACAATGACACTGCAGTCTTGGAGAGTCACCACA CAGCCCTGGCCTTCCAGCTCACAGTCAAGGACACCAAGTGCAACATTTTCAAGAATATTGACAGGAACCA CTATCGAACGCTGCGCCAGGCTATTATCGACATGGTTTTGGCTACAGAGATGACAAAACACTTCGAGCAC GTGAACAAATTCGTGAACAGCATCAACAAGCCACTGGCAGCTGAGAGTGAGGGCAGTGATTGTGAATGCA ACCCTACCGGGAAGAACTTTCCTGAGAACCAAATCCTCATCAAACGCATGATGATTAAGTGTGCCGACGT GGCCAACCCGTGCCGGCCCTTGGACCTGTGCATTGAATGGGCTGGAAGGATCTCCGAGGAGTACTTTGCT CAGACTGATGAAGAGAAGAGGCAGGGGCTGCCTGTGGTGATGCCAGTGTTCGACCGCAATACCTGCAGCA TCCCCAAGTCCCAGATCTCCTTCATCGACTACTTCATAACAGACATGTTTGATGCTTGGGATGCCTTCGC TCACCTGCCTGCCCTGATGCAGCACCTGGCCGATAACTATAAACACTGGAAGACACTGGATGACCTCAAG TGCAAAACTCTGAGACTTCCATCTGACAGCTGA
Translation (780 aa): MDQQQSVRQVSSAEVRIGPMRLTQDPIQVLLIFAKEDSQSDGFWWACDRAGYRCNIARTPESALECFLDK HHEIIVIDHRQSRNFDAEAVCRSIRATNPSEHTVILAVVSQASDDHEEASVLPLLHAGFNRRFMENSSII ACYNELIQIEHGEVRSQFKLRACNSVFTALDHCHEAIEITSDDHVIQYVNPAFERMMGYHKGELLGKELA DLPKSDKNRADLLDTINTCIKKGKEWQGVYYARRKSGDSIQQHVKITPVIGQGGKIRHFVSLKKLCCTTD SNKQIHRIHRDSGDNSQTEPHSFRHKSRRKESIDVKSISSRGSDAPSLQNRRYPSMARIHSMTIEAPITK VINIINAAQENSPVTVAEALDRVLEILRTTELYSPQLGTKDEDPHTSDLVGGLMTDGLRRLSGNEYVFTK NVHHSHSHLSMPITINDVPPSIAQLLDNEESWDFNIFELEAVTHKRPLVYLGLKVFSRFGVCEFLNCTET TLRAWLQVIEANYHSSNAYHNSTHAADVLHATAFFLGKERVKGSLDQLDEVAALIAATVHDVDHPGRTNS FLCNAGSELAVLYNDTAVLESHHTALAFQLTVKDTKCNIFKNIDRNHYRTLRQAIIDMVLATEMTKHFEH VNKFVNSINKPLAAESEGSDCECNPTGKNFPENQILIKRMMIKCADVANPCRPLDLCIEWAGRISEEYFA QTDEEKRQGLPVVMPVFDRNTCSIPKSQISFIDYFITDMFDAWDAFAHLPALMQHLADNYKHWKTLDDLK CKTLRLPSDS
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