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Report for CCDS84016.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84016.1 Public Mus musculus 13 Cdkal1 23 108 98 CCDS HistoryNCBI Gene:68916Re-query CCDS DB by CCDS ID:84016.1Re-query CCDS DB by GeneID:68916See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84016.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091674.11 ENSMUSP00000089262.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091674.11Link to Ensembl Protein Viewer:ENSMUSP00000089262.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000091674Re-query CCDS DB by Protein ID:ENSMUSP00000089262
Original member NCBI NM_001308486.1 NP_001295415.1 Updated not alive Link to Nucleotide Sequence:NM_001308486.1Link to Protein Sequence:NP_001295415.1Re-query CCDS DB by Nucleotide ID:NM_001308486Re-query CCDS DB by Protein ID:NP_001295415
Current member NCBI NM_001308486.2 NP_001295415.1 Accepted alive Link to Nucleotide Sequence:NM_001308486.2Link to Protein Sequence:NP_001295415.1Re-query CCDS DB by Nucleotide ID:NM_001308486Re-query CCDS DB by Protein ID:NP_001295415Link to BLAST:NP_001295415.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001295415.1 136 Q91WE6-5 136 100% 0 0

Chromosomal Locations for CCDS 84016.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 29804312 29804335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 29805099 29805202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 29846228 29846340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 29849939 29850108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (411 nt):
ATGCCTTCTGCGTCTTGTGATGTACTGCTGGATGACATAGAAGATATCATATCACAGGAAGATTCAAAGC
CACAGGACAGACAGTTCTCAAGAAAGCATGTGTTTCCTAAAGTACGAAGGCGGAATACCCAAAAATATTT
GCAAGAAGAGCCCAGGCCACCAAGTGACAGCACTATTCCAGGCATACAGAAAATTTGGATCCGAACATGG
GGCTGCTCACATAATAATTCGGATGGAGAATACATGGCTGGACAGCTTGCTGCCTATGGCTATAAAATTA
CAGCTCAGTCTGGAACGGAGTCAAGCTTGGGCGCCATGGAACTCATTCATCATCCGGTGCGCACTGTCCT
TCACTCTGTCCGCTGCAGGGTCTTGAAAACCCCTCTTATCCTACTAGTTGTATGGTGGTGA

Translation (136 aa):
MPSASCDVLLDDIEDIISQEDSKPQDRQFSRKHVFPKVRRRNTQKYLQEEPRPPSDSTIPGIQKIWIRTW
GCSHNNSDGEYMAGQLAAYGYKITAQSGTESSLGAMELIHHPVRTVLHSVRCRVLKTPLILLVVWW


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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