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Report for CCDS80913.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80913.1 Public Mus musculus 8 Irx6 23 108 98 CCDS HistoryNCBI Gene:64379Re-query CCDS DB by CCDS ID:80913.1Re-query CCDS DB by GeneID:64379See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80913.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167261.2 ENSMUSP00000127446.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167261.2Link to Ensembl Protein Viewer:ENSMUSP00000127446.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167261Re-query CCDS DB by Protein ID:ENSMUSP00000127446
Original member Current member NCBI NM_001301137.1 NP_001288066.1 Accepted alive Link to Nucleotide Sequence:NM_001301137.1Link to Protein Sequence:NP_001288066.1Re-query CCDS DB by Nucleotide ID:NM_001301137Re-query CCDS DB by Protein ID:NP_001288066Link to BLAST:NP_001288066.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288066.1 438 Q9ER75 438 100% 0 0

Chromosomal Locations for CCDS 80913.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 92675035 92675079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92676054 92676302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92676943 92677052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92677211 92677515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92678215 92678817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92679649 92679653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGGCCTTTTCACCTTTTGGACACCCGTATGGCAGCACATCCCAGTTTCTGGTGTCTGCAAGTTCCAGTG
CCACTTGCTGCGAAACGGCCCCTCGGCCAGTGTCAGATGTGGCCTCAGCCTCCACCTCTGCCTCTACTCT
TTGCTGTACACCCTATGACAGTCGGCTGCTGGGCAGTGCTCGGCCAGAGCTGGGAGCTGCCTTGGGCATC
TATGGAGCACCCTATGCAGCTGCCCAGAGTTACCCTGGGTACCTGACCTATGGCCCAGAGCCACCCACAC
TGTGTGGCGCACTGAATCCTCAGTATGAGTTCAAGGATGCTGCAGGAAGCTTTGCCCCCAGCCTGACCCA
GCCAGGGGCCTACTACCCCTATGAAACAACTCTGGGGCAGTATCAATACGACAGGTATGGCGGAGTGGAA
TTGAGCAGTGCTGGCCGCAGGAAGAATGCCACAAGGGAGAGCACCAGCGCACTGAAGGCCTGGCTCCACG
AGCACCGCAAGAACCCGTACCCCACCAAGGGCGAGAAGATCATGCTGGCCATCATCACCAAGATGACCCT
CACCCAGGTGTCCACCTGGTTCGCCAACGCGCGCCGGCGCCTCAAGAAGGAGAACAAGATGACATGGGCG
CCCAAGAACAAGGGAGGGGAGGAGAGGAAAGCAGACAGTGGAGAAGACTCTCTGGGATGCCTGAATGGTG
ACACCAAAGATGCTACTGCCAGCCAGGAAGCCCGGGGGCTGAGGCTGAGTGACCTGGAAGACCTGGAGGA
AGAGGAGGAAGAGGAAGAAGCAGAGGAGGAGGCAGCGGTCTCAGCAGCACGCAGGCTGGCGGATTTTCAG
AAGAGCACGCAACCCCTGCCTGCTCCCTGCGCCGCCGCCCAGGAGAGATGCTTGGAGAGCAGAGAGTGCG
GCCTGGGGCTACCCCGTTTCTCTTTTACTGAGGCCCCACAATCAGGGGAAGCTGACTTCATCACAGCAGA
GCCAGGCGGCCCCACGATGATCTTACACTACCCAAGTGGCCACAAACCCCGCATTTGGTCCTTAGCTCAC
ACTGCGGCAGCCAGCGCTGTCGAAAGTGCTCCCTCAACTCCGCCCAGGGCACAAAGTCCAGAGTGCCACA
TGATTCCCAGACAGCCCAGTTCTATCAGGCGACTCCTGGTACCCAGAGACTCCGAAGGCGAAGAGGATTC
TCCTGCAGCCAAAGCTTTTGGAAACTCCACGTTCACCCTGCAGGGGCTGCCACTGAACTGTGCACCATAC
CCGAGGCGGAGAGAGCCTGAAGTGCGGTTCCAGTACCCATCTGGAGCAGAAGGTTAG

Translation (438 aa):
MAFSPFGHPYGSTSQFLVSASSSATCCETAPRPVSDVASASTSASTLCCTPYDSRLLGSARPELGAALGI
YGAPYAAAQSYPGYLTYGPEPPTLCGALNPQYEFKDAAGSFAPSLTQPGAYYPYETTLGQYQYDRYGGVE
LSSAGRRKNATRESTSALKAWLHEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWA
PKNKGGEERKADSGEDSLGCLNGDTKDATASQEARGLRLSDLEDLEEEEEEEEAEEEAAVSAARRLADFQ
KSTQPLPAPCAAAQERCLESRECGLGLPRFSFTEAPQSGEADFITAEPGGPTMILHYPSGHKPRIWSLAH
TAAASAVESAPSTPPRAQSPECHMIPRQPSSIRRLLVPRDSEGEEDSPAAKAFGNSTFTLQGLPLNCAPY
PRRREPEVRFQYPSGAEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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