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Report for CCDS80900.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80900.1 Public Mus musculus 8 Zfp827 23 108 98 CCDS HistoryNCBI Gene:622675Re-query CCDS DB by CCDS ID:80900.1Re-query CCDS DB by GeneID:622675See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80900.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119254.7 ENSMUSP00000113199.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119254.7Link to Ensembl Protein Viewer:ENSMUSP00000113199.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119254Re-query CCDS DB by Protein ID:ENSMUSP00000113199
Original member NCBI NM_001294279.1 NP_001281208.1 Updated not alive Link to Nucleotide Sequence:NM_001294279.1Link to Protein Sequence:NP_001281208.1Re-query CCDS DB by Nucleotide ID:NM_001294279Re-query CCDS DB by Protein ID:NP_001281208
Current member NCBI NM_001294279.2 NP_001281208.1 Accepted alive Link to Nucleotide Sequence:NM_001294279.2Link to Protein Sequence:NP_001281208.1Re-query CCDS DB by Nucleotide ID:NM_001294279Re-query CCDS DB by Protein ID:NP_001281208Link to BLAST:NP_001281208.1

Chromosomal Locations for CCDS 80900.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 79028687 79028729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79060250 79061290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79070371 79070543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79076058 79076538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79091833 79092066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79118175 79118414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79120483 79120540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79136560 79136663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79175833 79175970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79178908 79179079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79180045 79180211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79185598 79185789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 79186176 79186357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3225 nt):
ATGCCCAGGAGGAAGCAGGAGCAGCCCAAGCGCCTTCCCTCACATGTTAGTAGGCAGGACGAGGCGGAGG
GAGATTTCAGCGAAGGAGAGCAGTGGTACGGAAACTCCTCTGAGACTCCGTCAGAAGCGTCCTATGGGGA
AGTCCAAGAGAACTATAAGCTGTCCCTGGAGGACCGGATCCAAGAGCAGTCCACATCCCCCGACACCTCC
CTGGGCAGTGCCACACCCAGCAGCCACACGCTGGAGTTGGTGGCACTTGATGGTGAGGTTCTCCGAGACT
CGCTGCAGTGTCAAGGTCACCTTTCACCCGGAGTGTCCTCTGTGTGCGATGATGACCCACCTAGTTCCAA
TAAACCTCTGAGCAGCAATTTGAGGCGGCTGCTGGAGGCCGGGTCCCTCAAACTCGATGGCACAGCCAAT
GGCAGGGTGGAGTCTCCCGTGAATGTTGGCCCCAGTCTGTCATTTTCCCCTCCGTCCCACCATGCCCAGC
AACTCAGTGTCCTGGCCAGGAAGCTGGCGGAGAAGCAGGACCAGAGTGACCAATTCACCCCAAGTAACCG
TTTCATATGGAATCAAGGTAAGTGGTTGCCGAACTCAACCACCACCTGTGGCCTGTCCCCTGACTCCGCC
ATCCTCAAACTGAAAGCCGCAGCCAATGCTGTTCTGCAGGACAAATCTCTGTCCCGGACTGAGGAGAGCC
TGAGGTTTGAGTCTTTTTCCTCCCCGTTCAGCTCGCAGTCTGCCAGCTCCACCTTGGCGGCCTTGTCTAA
GAAAGTGAGCGAGAGAAGTCTGACTCCGGGTCAGGAGCACCCGCCTCCTGCCAGCTCTTTCCTGTCATTG
GCCTCCATGACCTCCTCCGCAGCCCTTCTGAAAGAAGTGGCTGCCAGGGCCGCGGGTAGCCTTCTGGCTG
AGAAGTCATCTTTATTGCCTGATGACCCTCTACCACTGCCGTCTTCTGAGAAGAAGCCAGAAAAAGTCAC
CCCGCCCCCTCCCCCACCTCCTCCGACAGCGCAGCCGCCTCAGTCCTTGGAATTATTGCTACTTCCAGTT
TCCAAGGGAAGAGCCTCCAAGCCCTCCAATTCAGCCCCAGAAGAAGAAAGCGGGAAGCCATTCCAATGTC
CAATATGTGGTTTGGTTATAAAAAGGAAGAGTTACTGGAAGCGGCACATGGTGATTCACACGGGCTTAAA
GAGTCATCAGTGTCCACTCTGTCCATTCCGGTGTGCTCGCAAGGACAATCTCAAATCCCACATGAAGGTT
CATCAGCATCAGGACCGGGGAGAGACTTTTCAGTGCCAGCTGTGCCCTTTCACATCCTCACGCCACTTCA
GCCTGAAACTGCACATGCGTTGCCATCAGCACTTCCTGAGGACAGAGGCCAAGGTGAAGGAGGAGATCCC
AGACCCAGATGTCAAGGGATCTCCCCACCTCAGTGACAGTGGCTGCCTGGGGCAGCAGAGGGAAGGAGGA
GGGACAGAGCTAGTGGGGACCGTGATGACGTCTAACACGCCAGAGAGGACTGGCCAGGGTGGGGCTGGCG
TTGCACCTTTGCTGGTGAAGGAGGAGCCCAAGGAAGATAACGGCCTGCCCACCTCCTTTACCTTGAATGC
TGCCGACAGGCCCGCCAACCACACAAAGCTGAAAGACCCCTCCGAGTATGTGTCCAACAGTGCAGCAGTA
TTGTTCAGCCAGGACATCTCGGTTAAGATGGCCTCCGATTTTCTCATGAAGCTGTCAGCTGCAAACCAGA
AGGAGCCTATGAATCTTAATTTTAAAGTGAAGGAGGAGCCCAAGGAAGAGGAGTCCCTGAGCATGCCTTT
GCCTCGCTCCAGCTACGTGTTCAGCCCGGAACCGGAAGTGTCTACCCCAAGCGTCTCCGAGGACCCACTT
ACACCCCAGGAAGGCAAGGGGAGTGTGTTAAGGCGGGACATGTCGGCCAAGGCTGCCTCAGAACTTCTCA
TGAAACTCTCAGCGGAAAGCTACAAGGAGACGCAGGCGGTGACGGTTAAAGAAGAACCCATGGAGGTGGA
CATCCAGGACTCCCCAGCCTCCATATCACCCAGCCGGAACATTGGCTACAGCACTTTAATGGGGCGAGAG
AAAACTGAACCCTTACAGAAGCTGCCAGAAGGTCGAGTTCCCCCAGAGAGAAATCTCTTCAGCCAGGACA
TCTCTGTGAAGATGGCTTCTGAGCTGCTTTTTCAGCTCTCGGAAAAAGTGAGCAAAGAACACAATCACAC
GAAAGAAAACGCAATGCGGACAACCACCAGCCCTTTCTTTTCAGAAGACACATTTAGACAATCACCATTC
ACCTCCAATTCAAAAGATCTGCTGCCTGGTGAATCTGTGCTGCACGGAAGAGTGTCTGCTCCAGAGACCG
AGAAGATTGTCCTTGAGGCAGGAAACGGACTGCCATCCTGGAAATTCAATGACCAGCTCTTCCCTTGCGA
TGTGTGTGGGAAAGTGTTCGGACGACAGCAGACATTGTCTCGACACCTCTCATTGCACACAGAGGAAAGA
AAATACAAATGCCACTTGTGCCCCTATGCTGCTAAGTGCCGTGCGAACCTGAACCAGCATCTGACCGTGC
ACTCTGTGAAGCTCGTGAGTACCGACACCGAGGACATAGTCAGTGCTGTCACTTCTGAGGGCAGTGATGG
GAAGAAACACCCGTATTACTACAGTTGCCACGTGTGTGGATTTGAGACGGAGCTCAATGTTCAGTTTGTA
AGCCACATGTCTCTCCATGTGGACAAGGAACAGTGGATGTTTTCCATCTGCTGCACGGCCTGCGACTTTG
TCACCATGGAGGAAGCAGAGATAAAGACTCACATTGGCACCAAGCACACAGGGGATGATAGGAAGACCCC
CAGTGAATCGAACAGCCCCTCTTCATCCTCCCTGTCAACTCTGAGTGATTCAGCCAATGGCAAAGATGAC
TCAGACAGCTCCCAGAAAAACAAGGGCGGGAACAACTTGCTGGTCATCTCTGTGGTGCCCGGGAGCCAGC
CCTCACTGAACAACGAGGAAAAGCCAGAGAAAGGGTTCGAATGCGTTTTTTGCAACTTTGTCTGCAAGAC
GAAGAATATGTTTGAGCGCCATCTGCAAATCCACCTCATCACCCGGATGTTTGAGTGTGATGTGTGCCAC
AAGTTCATGAAGACTCCCGAACAGCTGCTGGAGCACAAGAAATGCCACACTGTCCCCACCGGTGGGCTCA
AGTAA

Translation (1074 aa):
MPRRKQEQPKRLPSHVSRQDEAEGDFSEGEQWYGNSSETPSEASYGEVQENYKLSLEDRIQEQSTSPDTS
LGSATPSSHTLELVALDGEVLRDSLQCQGHLSPGVSSVCDDDPPSSNKPLSSNLRRLLEAGSLKLDGTAN
GRVESPVNVGPSLSFSPPSHHAQQLSVLARKLAEKQDQSDQFTPSNRFIWNQGKWLPNSTTTCGLSPDSA
ILKLKAAANAVLQDKSLSRTEESLRFESFSSPFSSQSASSTLAALSKKVSERSLTPGQEHPPPASSFLSL
ASMTSSAALLKEVAARAAGSLLAEKSSLLPDDPLPLPSSEKKPEKVTPPPPPPPPTAQPPQSLELLLLPV
SKGRASKPSNSAPEEESGKPFQCPICGLVIKRKSYWKRHMVIHTGLKSHQCPLCPFRCARKDNLKSHMKV
HQHQDRGETFQCQLCPFTSSRHFSLKLHMRCHQHFLRTEAKVKEEIPDPDVKGSPHLSDSGCLGQQREGG
GTELVGTVMTSNTPERTGQGGAGVAPLLVKEEPKEDNGLPTSFTLNAADRPANHTKLKDPSEYVSNSAAV
LFSQDISVKMASDFLMKLSAANQKEPMNLNFKVKEEPKEEESLSMPLPRSSYVFSPEPEVSTPSVSEDPL
TPQEGKGSVLRRDMSAKAASELLMKLSAESYKETQAVTVKEEPMEVDIQDSPASISPSRNIGYSTLMGRE
KTEPLQKLPEGRVPPERNLFSQDISVKMASELLFQLSEKVSKEHNHTKENAMRTTTSPFFSEDTFRQSPF
TSNSKDLLPGESVLHGRVSAPETEKIVLEAGNGLPSWKFNDQLFPCDVCGKVFGRQQTLSRHLSLHTEER
KYKCHLCPYAAKCRANLNQHLTVHSVKLVSTDTEDIVSAVTSEGSDGKKHPYYYSCHVCGFETELNVQFV
SHMSLHVDKEQWMFSICCTACDFVTMEEAEIKTHIGTKHTGDDRKTPSESNSPSSSSLSTLSDSANGKDD
SDSSQKNKGGNNLLVISVVPGSQPSLNNEEKPEKGFECVFCNFVCKTKNMFERHLQIHLITRMFECDVCH
KFMKTPEQLLEHKKCHTVPTGGLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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