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Report for CCDS80312.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80312.1 Public Mus musculus 5 Stap1 23 108 98 CCDS HistoryNCBI Gene:56792Re-query CCDS DB by CCDS ID:80312.1Re-query CCDS DB by GeneID:56792See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80312.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031171.8 ENSMUSP00000031171.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031171.8Link to Ensembl Protein Viewer:ENSMUSP00000031171.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031171Re-query CCDS DB by Protein ID:ENSMUSP00000031171
Original member Current member NCBI NM_001310639.1 NP_001297568.1 Accepted alive Link to Nucleotide Sequence:NM_001310639.1Link to Protein Sequence:NP_001297568.1Re-query CCDS DB by Nucleotide ID:NM_001310639Re-query CCDS DB by Protein ID:NP_001297568Link to BLAST:NP_001297568.1

Chromosomal Locations for CCDS 80312.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 86071838 86071957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86077989 86078060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86084389 86084445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86086650 86086822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86090897 86091025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86094733 86094802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86096497 86096593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86103700 86103761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (780 nt):
ATGATGGCGAAAAAGCCCCCGAAACCTGCCCCTCGCAGGATCTTCCAGGAAAGACTGAAGATCACTGCTC
TGCCCCTGTACTTTGAAGGATTTTTACTGGTCAAACGGTCTGATCACCAGGAGTACAAACACTATTGGAC
GGAGCTGAGAGGGACCACGCTGTTCTTTTACACTGACAAAAAAAGCACAATCACAGAAAACACAGAAAGT
GGAGAAGAATGGAGGGGCTTCATTCTTACAGTAACAGAGTTGACAGTTCCTCAGCATGTGTCACTTCTAC
CTGGGCAAGTGATTAGACTGCACGAAGTCTTAGAGAGAGAAAAGAAAAGAAGGATTGAGACAGATCAGCT
GCCTCTTATGCCTCCGGAGAAAGAGAAGGAGCCAGTACAAGACTATGCGGATGTACTGAACCCACTGCCT
GAATGTTTTTATGCAGTTTCCCGGAAAGAAGCAACTGCAATGCTGGAAAAGAACCCTTCTTGGGGAAATA
TGATCCTGAGGCCTGGTAGTGACAGCAAAAACTACTCCATCACTATCCGGCAGGAGATAGAAATGCCAAG
AATCAAGCACTTCAAAGTGACGCGCACTGGAAACAACTACACCATCGAGCTGGAAAAACCTGTAACACTC
CCAAACCTTTTCAGTGTCATTGATTATTTTGTGAAGGAGACTCGAGGGAATTTGAGACCATTTATACATT
CAGCTGATGACAACTTTGGTCAAGATCCCAACATAGAAGACAGGAGTGAGAAGTTTAAGAAAAATCCACA
CAATGCATGA

Translation (259 aa):
MMAKKPPKPAPRRIFQERLKITALPLYFEGFLLVKRSDHQEYKHYWTELRGTTLFFYTDKKSTITENTES
GEEWRGFILTVTELTVPQHVSLLPGQVIRLHEVLEREKKRRIETDQLPLMPPEKEKEPVQDYADVLNPLP
ECFYAVSRKEATAMLEKNPSWGNMILRPGSDSKNYSITIRQEIEMPRIKHFKVTRTGNNYTIELEKPVTL
PNLFSVIDYFVKETRGNLRPFIHSADDNFGQDPNIEDRSEKFKKNPHNA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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