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Report for CCDS80009.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80009.1 Public Mus musculus 3 Plppr5 23 108 98 CCDS HistoryNCBI Gene:75769Re-query CCDS DB by CCDS ID:80009.1Re-query CCDS DB by GeneID:75769See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80009.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106473.4 ENSMUSP00000102081.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106473.4Link to Ensembl Protein Viewer:ENSMUSP00000102081.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106473Re-query CCDS DB by Protein ID:ENSMUSP00000102081
Original member Current member NCBI NM_001305451.1 NP_001292380.1 Accepted alive Link to Nucleotide Sequence:NM_001305451.1Link to Protein Sequence:NP_001292380.1Re-query CCDS DB by Nucleotide ID:NM_001305451Re-query CCDS DB by Protein ID:NP_001292380Link to BLAST:NP_001292380.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292380.1 321 Q8BJ52-1 321 100% 0 0

Chromosomal Locations for CCDS 80009.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 117575696 117575932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 117620969 117621101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 117625655 117625905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 117662453 117662629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 117671900 117672034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 117686616 117686648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGCCCCTGCTGCCCGTGGCGCTCATCAGCAGCATGCTCTATTTCCAGATGGTGATCATGGCAGGGACGG
TGATGCTGGCTTACTACTTCGAATACACAGACACGTTCACTGTGAACGTGCAGGGATTCTTCTGCCACGA
CAGCGCCTACCGTAAGCCCTACCCGGGCCCAGAGGACAGCAGCGCGGTGCCCCCGGTGCTCCTCTACTCG
CTGGCCGCTGGCGTCCCGGTGCTTGTGATAATAGTTGGAGAAACTGCAGTGTTTTGCCTGCAATTAGCCA
CAAGAGATTTTGAAAACCAGGAAAAAACCATTTTAACTGGAGATTGTTGCTATATAAACCCACTGGTACG
CCGAACCGTCCGATTTCTTGGAATTTATGCATTTGGACTGTTTGCTACAGATATCTTTGTAAATGCTGGG
CAAGTGGTTACAGGAAACCTAGCTCCACACTTTCTGGCTTTGTGTAAGCCAAACTACACAGCGCTCGGAT
GTCAGCAGTACACACAGTTTATCAGTGGGGAGGAAGCATGCACAGGCAACCCAGACCTCATCATGCGAGC
ACGGAAAACATTCCCATCCAAGGAAGCTGCCCTGAGTGTCTACGCTGCCACGTATCTGACGATGTACATT
ACCAGCACTATCAAAGCCAAAGGAACCAGACTTGCTAAGCCTGTCCTGTGCTTGGGATTAATGTGTTTGG
CCTTTCTTACTGGACTCAACAGAGTAGCGGAATATCGAAATCATTGGTCAGATGTGATAGCAGGCTTCCT
AGTCGGAATATCTATAGCAGTATTTCTGGTTGTATGCGTGGTAAACAATTTTAAAGGAAGACAACCAGAA
AATGGGCATATACACAGGGACAATGTGGCCCGGATGCCAATGACCAACATTCCTCGAGTAGAAAGCCCTT
TGGAAAAGGTAACATCTCTGCAGAACCACGTCACTGCCTTTGCGGAAGTCACATGA

Translation (321 aa):
MPLLPVALISSMLYFQMVIMAGTVMLAYYFEYTDTFTVNVQGFFCHDSAYRKPYPGPEDSSAVPPVLLYS
LAAGVPVLVIIVGETAVFCLQLATRDFENQEKTILTGDCCYINPLVRRTVRFLGIYAFGLFATDIFVNAG
QVVTGNLAPHFLALCKPNYTALGCQQYTQFISGEEACTGNPDLIMRARKTFPSKEAALSVYAATYLTMYI
TSTIKAKGTRLAKPVLCLGLMCLAFLTGLNRVAEYRNHWSDVIAGFLVGISIAVFLVVCVVNNFKGRQPE
NGHIHRDNVARMPMTNIPRVESPLEKVTSLQNHVTAFAEVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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