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Report for CCDS79627.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79627.1 Public Mus musculus 18 Pcdhga5 23 108 98 CCDS HistoryNCBI Gene:93713Re-query CCDS DB by CCDS ID:79627.1Re-query CCDS DB by GeneID:93713See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79627.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000193414.1 ENSMUSP00000141893.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193414.1Link to Ensembl Protein Viewer:ENSMUSP00000141893.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193414Re-query CCDS DB by Protein ID:ENSMUSP00000141893
Original member Current member NCBI NM_033588.5 NP_291066.1 Accepted alive Link to Nucleotide Sequence:NM_033588.5Link to Protein Sequence:NP_291066.1Re-query CCDS DB by Nucleotide ID:NM_033588Re-query CCDS DB by Protein ID:NP_291066Link to BLAST:NP_291066.1

Chromosomal Locations for CCDS 79627.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37694501 37696924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37825021 37825079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37833265 37833353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37839903 37840129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2799 nt):
ATGGCAGACCCACCGAGGCGCTGGATCTGCAACGACTTGCTGACGTTCTTCATGCTGCTGGGGACGCTGT
GCGCGCCAGGAAAGGGGCAGATCCGCTACTCTGTGCGGGAGGAGCTGGACAAAGGCTCCTTCGTGGGCAA
CATCTCCAAGGACCTGGGGCTGGAGCCCCGCGAGCTGGCGGAGCGCGGGGTCCGCATTATCTCCAGAGGT
AGGTCGCAGCTTTTCTCTCTGAACCCGCGAGGCGGCAGCCTGGTCACCGCGGGCAGGATAGACAGGGAAG
AGCTGTGCGTCCAGAGCTCTCCCTGTCTCGTCAGCTTTAACATCTTGGTTGAAAATAAAATGAAAATTTA
TGGAGTAGAAGTGGAAATCCTTGATATTAATGATAACTTCCCCCGGTTCCGCGATGAGGAGTTAAAAGTA
AAAGTTAATGAAAACGCAGCTGCAGGAACACGTTTGGTGCTCCCCTTCGCGAGAGATGGGGATGTGGGTG
TGAATTCCCTCCAGGGTTACAAGCTTAGCTCCAACCGGCACTTCTCTCTGGACGTGAAGAGCGGATCTGA
CGGGCAAAAACACCCAGAGTTGGTGTTGGAACAGCCCCTGGACCGTGAGAAGGAGTCTGCTCATGACCTG
GTCCTCACAGCTTTGGATGGCGGAAACCCAGTACTTTCGAGCACCGTCCATATCAGCGTGACCGTTCTTG
ATGCAAACGATAACGCACCCTTGTTTACCCAAAGCGAATATAGGGTGAGTGTTCCGGAGAACACACCTGT
GGGCACTAGACTCCTCACACTCACCGCCACGGATGCAGACGAGGGAATCAACGCAAAGTTGACCTTCTCT
TTCCGCAACGAAGAAGACAAAATTTCTGAAACTTTCCAACTCGATTCTAATCTTGGGGAAATCTCAACTA
TTCAATCCCTGGACTATGAAGAATCCAGATTCTATCTCATGGAAGTGGTAGCTCAGGACGGAGGCGCTCT
TCTTGCCAGCGCTAAGGTGTTGGTCACAGTCCAGGATGTGAATGACAATGCCCCAGAAGTGATACTCACC
TCCCTCACCAGCTCCGTCTCTGAAGACTGTCTACCCGGAACCATAATTGCGCTTTTCAGCGTACATGATG
CTGATTCTGGGGAGAATGGAGAAATTTCATGTTCTATTCCCAAAAACCTGCCCTTCAAACTGGAAAAGTC
AGTTGATAATTACTATCACCTACTAACAACAAGAGCACTGGATAGAGAAGAGACTTCAGATTATAACATC
ACAGTGACCGTTGTTGACCGTGGAACTCCTCCCCTGTCTACAGAAAACCACATCTCTCTGAAAGTAGCCG
ACATAAATGACAACCCACCCACCTTCTCTCGTCCCTTCTATTCCACTTCCATCTCAGAAAATAACCCCAG
AGGTGTCTCCATTTTTTCGGTTTACGCCTATGACGCTGACAGTGGTGATAACGCCCAAGTCACTTACTCC
CTGGCTGAAAATACATTTCAAGAAGTGCCTGTGTCATCCTATGTCTCCATTAACTCTGACACTGGTGTCC
TGTATGCATTGCAATCCTTTGACTATGAGCACTTGAGAGACCTGCAGCTACTGGTGACAGCTAAGGACAG
TGGGACTCCTCCACTCAGCAGCAATGTGTCCATGAGCTTGTTTGTGCTGGACCAGAATGACAACATTCCT
GAGATCCTGTACCCAACTATTCCCACTGATGGCTCCACAGGTGTGGAACTGGCACCACGATCTGCAGAGC
CTGGATACCTGGTAACCAAAGTGGTGGCAGTGGACAAAGATTCGGGACAGAATGCCTGGTTGTCCTACCG
CCTGCTCAAGGCCAGTGAACCAGGACTCTTCTCAATAGGGCTTCACACGGGTGAGGTGTGCACAGCAAGG
GCTCTGTTGGATAGAGATGTTCTCAAGCAGAGCCTGGTGGTGGCTGTCCAGGACCATGGCCAGCCCCCTC
TCTCAGCCACTGTCACACTCACTATCGCTGTAGGAGATAGCATCCCAGATGTACTGACTGACTTAGGCAA
CCACAACACACTGGCAGAGCCCCAGGATTCAGACCTCACACTCTACCTAGTGGTTTCGGTGGCAGTGGTG
TCCTGTGTCTTTCTGGGATTTGTTACCGTGCTGTTGGCCCTCAGGCTGAGGCACTGGCACATGTCACGCC
TGCTTCAGACTTCCACAGGCAGATTGGCCGACATGCCCGCCTCCCATTTTGTGGGCATGGATGGGGTGCA
GGCTTACCTGCAGACCTATTCCCACGAAATCTCCCTCACTACAGACTCCAAAAAGAGCCACCTGATCTTC
CCCCAGCCCAATTATGCTGACAGGCTCATTAGTGAAGAGAGCTGTGAGAAGAGTGAGCCTCTTCTGATAC
CTCATAATATACACACACACAAAGAAGAGCCCGGAGATGCTCAGCAAGCCCCGCCCAACACTGACTGGCG
TTTCTCTCAAGCCCAGAGACCCGGCACGAGCGGATCCCAAAATGGTGATGAAACTGGCACCTGGCCCAAC
AACCAGTTTGATACAGAGATGCTGCAAGCCATGATCTTGGCCTCTGCCAGCGAAGCTGCTGATGGGAGCT
CTACCCTGGGAGGGGGCGCTGGCACCATGGGTCTGAGCGCTCGATACGGACCCCAGTTTACCCTGCAGCA
CGTGCCTGACTACCGCCAGAACGTGTACATCCCTGGCAGCAATGCCACGCTGACCAATGCCGCTGGCAAA
CGAGATGGCAAGGCTCCAGCAGGTGGTAATGGCAACAAGAAGAAATCGGGCAAGAAAGAGAAGAAGTAA

Translation (932 aa):
MADPPRRWICNDLLTFFMLLGTLCAPGKGQIRYSVREELDKGSFVGNISKDLGLEPRELAERGVRIISRG
RSQLFSLNPRGGSLVTAGRIDREELCVQSSPCLVSFNILVENKMKIYGVEVEILDINDNFPRFRDEELKV
KVNENAAAGTRLVLPFARDGDVGVNSLQGYKLSSNRHFSLDVKSGSDGQKHPELVLEQPLDREKESAHDL
VLTALDGGNPVLSSTVHISVTVLDANDNAPLFTQSEYRVSVPENTPVGTRLLTLTATDADEGINAKLTFS
FRNEEDKISETFQLDSNLGEISTIQSLDYEESRFYLMEVVAQDGGALLASAKVLVTVQDVNDNAPEVILT
SLTSSVSEDCLPGTIIALFSVHDADSGENGEISCSIPKNLPFKLEKSVDNYYHLLTTRALDREETSDYNI
TVTVVDRGTPPLSTENHISLKVADINDNPPTFSRPFYSTSISENNPRGVSIFSVYAYDADSGDNAQVTYS
LAENTFQEVPVSSYVSINSDTGVLYALQSFDYEHLRDLQLLVTAKDSGTPPLSSNVSMSLFVLDQNDNIP
EILYPTIPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFSIGLHTGEVCTAR
ALLDRDVLKQSLVVAVQDHGQPPLSATVTLTIAVGDSIPDVLTDLGNHNTLAEPQDSDLTLYLVVSVAVV
SCVFLGFVTVLLALRLRHWHMSRLLQTSTGRLADMPASHFVGMDGVQAYLQTYSHEISLTTDSKKSHLIF
PQPNYADRLISEESCEKSEPLLIPHNIHTHKEEPGDAQQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPN
NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK
RDGKAPAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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