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Report for CCDS79164.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79164.1 Public Mus musculus 13 Prl2c5 23 108 98 CCDS HistoryNCBI Gene:107849Re-query CCDS DB by CCDS ID:79164.1Re-query CCDS DB by GeneID:107849See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79164.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000126540.7 ENSMUSP00000115024.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126540.7Link to Ensembl Protein Viewer:ENSMUSP00000115024.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000126540Re-query CCDS DB by Protein ID:ENSMUSP00000115024
Original member Current member NCBI NM_001311129.1 NP_001298058.1 Accepted alive Link to Nucleotide Sequence:NM_001311129.1Link to Protein Sequence:NP_001298058.1Re-query CCDS DB by Nucleotide ID:NM_001311129Re-query CCDS DB by Protein ID:NP_001298058Link to BLAST:NP_001298058.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001298058.1 225 Q9JLV9-2 225 100% 0 0

Chromosomal Locations for CCDS 79164.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 13183005 13183044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13185790 13185965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13189368 13189475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13190586 13190768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 13191645 13191815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (678 nt):
ATGCACAGTGCATTTATGGATCTTTGTTTCTTAAAGAGAGGGATACTGCTCCTACTACTGGTGAACAGCT
CGTTATTGTGGAAGAATGTTGCATCATTGCCCATGTGTGCAATGAGGAATGATCGTTGCTTTATGTTCTT
TGAAGACACATTTGAATTAGCCGGCAGTTTGTCTCATAATATCAGTATAGAAGTTTCAGAACTGTTCACT
GAGTTTGAAAAACATTATTCTAACGTGCCTGGGCTCAGAGACAAAAGCCCCATGAGATGCCATACTTCTT
TCCTTCCAACTCCAGAAAACAAGGAACAAGCCAGGCACATACGCTATGAAGCTCTTCTGAAATCAGGAGA
CATGATTTTGGATGCCTGGGAAAACCCTCTGGACTATCTAGTGAGTGAATTATCTACCATAAAAAATGTC
CCTGATATAATCATCTCCAAAGCCACAGACATAAAGAAAAAGATCAACGCAGTCCAGAACGGGGTTAATG
CCCTCATGAGCACCATGAATGGAGATGAAGAAAATAAGAACCCTGCCTGGTTCTTGCAATCTGACAATGA
AGATGCTCGCATTCGTTCTTCATATGGCATGATCAGCTGCCTAGACAATGACTTTAAGAAGGTTGATATT
TATCTCAACATCCTGAAGTGTTACATGTTAAAAATAGATAACTGCTGA

Translation (225 aa):
MHSAFMDLCFLKRGILLLLLVNSSLLWKNVASLPMCAMRNDRCFMFFEDTFELAGSLSHNISIEVSELFT
EFEKHYSNVPGLRDKSPMRCHTSFLPTPENKEQARHIRYEALLKSGDMILDAWENPLDYLVSELSTIKNV
PDIIISKATDIKKKINAVQNGVNALMSTMNGDEENKNPAWFLQSDNEDARIRSSYGMISCLDNDFKKVDI
YLNILKCYMLKIDNC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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