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Report for CCDS72463.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72463.1 Public Mus musculus X Txlng 23 108 98 CCDS HistoryNCBI Gene:353170Re-query CCDS DB by CCDS ID:72463.1Re-query CCDS DB by GeneID:353170See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72463.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112316.8 ENSMUSP00000107935.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112316.8Link to Ensembl Protein Viewer:ENSMUSP00000107935.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112316Re-query CCDS DB by Protein ID:ENSMUSP00000107935
Original member Current member NCBI NM_001290776.1 NP_001277705.1 Accepted alive Link to Nucleotide Sequence:NM_001290776.1Link to Protein Sequence:NP_001277705.1Re-query CCDS DB by Nucleotide ID:NM_001290776Re-query CCDS DB by Protein ID:NP_001277705Link to BLAST:NP_001277705.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277705.1 475 Q8BHN1-3 475 100% 0 0

Chromosomal Locations for CCDS 72463.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 162781092 162781418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162782229 162782324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162784322 162784414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162786617 162786691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162787559 162787678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162790612 162790806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162797640 162797810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162807485 162807576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162811292 162811388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162811536 162811595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 162829239 162829340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGGCGACTCGGCTTGAGGAGGTAACGCGAGGAAGAGGCGGCGGTACTGAGGAGGCTAGTGAGGGCGGAC
GGGGCGGACGGCGACGTAGCCCCCCGCAGAAGTTTGAAATTGGCACAATGGAAGAAGCTAGAATTTGTGG
GTTAGGAGTAAAAGCAGACATGGAGAAAAGAGAAGAAATTCCTGGACGAGAAGCTCGAACAGGTCCTCCT
GATGGCCAGCAAGATTCAGAGTGCAGCAGGAACAAAGAGAAGACCTTAGGAAAAGAAGTTTTATTACTGA
TGCAAGCGCTAAACACCCTTTCAACCCCAGAGGAGAAGCTGGCAGCTCTCTGTAAGAAATATGCTGATCT
CCTGGAAGAAAGCAGGAATGTTCAGAAACAAATGAAGATTCTGCAGAAGAAGCAAGCCCAGATTGTGAAA
GAGAAAGTTCACCTTCAGAGTGAACACAGCAAGGCCATCTTGGCAAGAAGCAAACTGGAATCTCTTTGCA
GGGAACTTCAGCGTCATAATAAGACCTTAAAGGAGGAGAATATGCAGCAGGCACGAGAGGAGGAAGAACG
ACGTAAAGAAGCAACAGCACATTTCCAGATAACTCTAAATGAAATCCAAGCTCAGTTGGAACAACATGAC
ATCCACAATGCCAAACTGCGACAGGAGAACATTGAACTGGGAGAGAAGTTGAAGAAGCTTATTGAGCAGT
ATGCACTAAGGGAAGAGCATATTGATAAAGTATTCAAACACAAGGAATTGCAACAACAGCTTGTGGATGC
CAAACTTCAGCAAACAACACAGCTGATAAAAGAAGCTGATGAAAAACATCAGAGAGAGAGAGAGTTTTTA
TTAAAAGAAGCAACAGAATCCAGGCACAAATATGAACAAATGAAACAGCAAGAAGTACAACTAAAACAGC
AGCTTTCTCTTTATATGGATAAATTTGAAGAATTCCAGACTACTATGGCAAAAAGCAATGAACTTTTTAC
AACCTTCAGGCAGGAAATGGAAAAGATGACAAAGAAAATTAAAAAACTGGAAAAAGAAACAATAATATGG
CGTACCAAATGGGAAAACAATAATAAAGCACTTCTGCAGATGGCCGAAGAGAAAACTGTCCGTGATAAAG
AGTACAAGGCTTTTCAAATAAAACTGGAACGGTTAGAGAAGCTGTGCAGGGCTCTTCAGACAGAGAGAAA
TGAGCTCAACGAGAAGGTCGAAGTCCTGAAAGAGCAGGTCTCTATCAAAGCAGCAGATGGGGACTTGGTG
TCACCTGCAACGCAGCCCTGTGCTGTCCTGGATTCCTTCAAAGAGACTTCAAGAAGAACCCTGGGAATGC
ACTTGGAGGCTAGAGCCAAGTCAGTGTGTGAGAAAAGTGCTGCACAAAAGCCCTCATCTTCAGGTTCTCC
TGCTCAAGGCATTGAGTCAGTTGACTAG

Translation (475 aa):
MATRLEEVTRGRGGGTEEASEGGRGGRRRSPPQKFEIGTMEEARICGLGVKADMEKREEIPGREARTGPP
DGQQDSECSRNKEKTLGKEVLLLMQALNTLSTPEEKLAALCKKYADLLEESRNVQKQMKILQKKQAQIVK
EKVHLQSEHSKAILARSKLESLCRELQRHNKTLKEENMQQAREEEERRKEATAHFQITLNEIQAQLEQHD
IHNAKLRQENIELGEKLKKLIEQYALREEHIDKVFKHKELQQQLVDAKLQQTTQLIKEADEKHQREREFL
LKEATESRHKYEQMKQQEVQLKQQLSLYMDKFEEFQTTMAKSNELFTTFRQEMEKMTKKIKKLEKETIIW
RTKWENNNKALLQMAEEKTVRDKEYKAFQIKLERLEKLCRALQTERNELNEKVEVLKEQVSIKAADGDLV
SPATQPCAVLDSFKETSRRTLGMHLEARAKSVCEKSAAQKPSSSGSPAQGIESVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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