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Report for CCDS72396.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72396.1 Public Mus musculus X Avpr2 23 108 98 CCDS HistoryNCBI Gene:12000Re-query CCDS DB by CCDS ID:72396.1Re-query CCDS DB by GeneID:12000See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72396.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101470.2 ENSMUSP00000099011.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101470.2Link to Ensembl Protein Viewer:ENSMUSP00000099011.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000101470Re-query CCDS DB by Protein ID:ENSMUSP00000099011
Original member Current member NCBI NM_001276298.1 NP_001263227.1 Accepted alive Link to Nucleotide Sequence:NM_001276298.1Link to Protein Sequence:NP_001263227.1Re-query CCDS DB by Nucleotide ID:NM_001276298Re-query CCDS DB by Protein ID:NP_001263227Link to BLAST:NP_001263227.1

Chromosomal Locations for CCDS 72396.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 73892244 73892268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73892627 73893420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73893669 73893854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGATCCTGGTGTCTACCACGTCTGTGCCTGGGGCCCTTTCGTCCCCTAGCTCTCCCAGCAACAGCAGCC
AGGAGGAGCTACTGGATGACCGAGACCCGCTGTTAGTCCGGGCTGAACTGGCCCTGCTATCTACAATTTT
TGTGGCTGTGGCCTTGAGCAATGGCCTAGTGCTTGGGGCCCTAATACGACGGGGTCGGCGTGGACGCTGG
GCACCCATGCACGTCTTCATCAGTCATTTGTGCCTAGCTGACCTGGCTGTGGCTCTGTTTCAAGTGCTGC
CCCAGCTGGCTTGGGATGCCACCGACCGCTTCCATGGCCCTGATGCCTTGTGTCGGGCCGTCAAGTACCT
GCAGATGGTGGGCATGTATGCCTCTTCCTACATGATCCTGGCCATGACACTAGACCGCCATCGCGCCATC
TGCCGCCCTATGCTGGCATACCGCCATGGAGGTGGGGCTCGCTGGAACAGGCCAGTGCTGGTGGCCTGGG
CCTTCTCACTCCTTCTCAGCCTGCCTCAGCTCTTCATCTTTGCTCAACGTGATGTGGGAAATGGCAGTGG
GGTATTTGATTGCTGGGCCCGATTTGCAGAGCCATGGGGCCTTCGTGCCTATGTCACCTGGATCGCCTTG
ATGGTGTTTGTGGCACCTGCCCTAGGCATTGCTGCCTGCCAGGTTCTTATCTTCCGGGAGATACATGCCA
GTCTGGTGCCAGGGCCATCTGAAAGGGCAGGGAGGCGCCGCAGAGGACACCGGACAGGAAGTCCCAGCGA
GGGAGCCCATGTATCAGCAGCCATGGCCAAGACCGTGAGGATGACACTGGACCCCCCTTTGTGTTGCTCA
TGCTGCTGGCTAGCCTTAACAGCTGTACCAACCCCTGGATCTATGCTTCCTTCAGTAGCAGTGTCTCCTC
GGAGTTGCGTAGCCTGCTTTGCTGTGCTCAGAGGCACACCACACACAGCCTGGGTCCTCAAGATGAGTCC
TGTGCCACAGCCAGCTCCTCTCTGA

Translation (334 aa):
MILVSTTSVPGALSSPSSPSNSSQEELLDDRDPLLVRAELALLSTIFVAVALSNGLVLGALIRRGRRGRW
APMHVFISHLCLADLAVALFQVLPQLAWDATDRFHGPDALCRAVKYLQMVGMYASSYMILAMTLDRHRAI
CRPMLAYRHGGGARWNRPVLVAWAFSLLLSLPQLFIFAQRDVGNGSGVFDCWARFAEPWGLRAYVTWIAL
MVFVAPALGIAACQVLIFREIHASLVPGPSERAGRRRRGHRTGSPSEGAHVSAAMAKTVRMTLDPPLCCS
CCWLALTAVPTPGSMLPSVAVSPRSCVACFAVLRGTPHTAWVLKMSPVPQPAPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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