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Report for CCDS71138.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71138.1 Public Mus musculus 2 Astl 23 108 98 CCDS HistoryNCBI Gene:215095Re-query CCDS DB by CCDS ID:71138.1Re-query CCDS DB by GeneID:215095See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71138.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089673.9 ENSMUSP00000087102.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089673.9Link to Ensembl Protein Viewer:ENSMUSP00000087102.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000089673Re-query CCDS DB by Protein ID:ENSMUSP00000087102
Original member Current member NCBI NM_001291003.1 NP_001277932.1 Accepted alive Link to Nucleotide Sequence:NM_001291003.1Link to Protein Sequence:NP_001277932.1Re-query CCDS DB by Nucleotide ID:NM_001291003Re-query CCDS DB by Protein ID:NP_001277932Link to BLAST:NP_001277932.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277932.1 435 Q6HA09-1 435 100% 0 0

Chromosomal Locations for CCDS 71138.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 127341697 127341751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127342351 127342476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127343954 127344015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127345450 127345543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127345941 127346058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127347148 127347329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127350164 127350245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127350458 127350612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127356341 127356774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1308 nt):
ATGGGTATCATGGGAAGCCTGTGGCCTTGGATATTAACTATGCTCTCCTTGCTAGGTTTGAGCATGGGAG
CACCCTCAGCATCCAGATGTTCTGGAGTCTGCAGTACCAGTGTTCCAGAAGGCTTCACTCCTGAGGGAAG
CCCGGTATTTCAGGACAAGGACATCCCCGCAATTAACCAAGGGCTCATCTCAGAGGAGACCCCAGAAAGC
AGCTTCCTGGTAGAAGGGGACATTATCCGGCCAAGCCCTTTCCGATTGTTGTCAGTGACCAATAATAAAT
GGCCCAAGGGCGTTGGTGGCTTTGTGGAGATCCCCTTCCTGCTTTCCAGAAAGTATGATGAACTCAGCCG
CCGGGTCATTATGGATGCCTTTGCTGAGTTTGAACGTTTCACATGCATCCGGTTTGTTGCCTACCATGGT
CAGAGAGACTTTGTTTCCATTCTTCCTATGGCGGGGTGTTTCTCTGGTGTGGGACGCAGTGGAGGGATGC
AGGTGGTGTCCTTGGCACCCACTTGTCTCCGGAAGGGCCGAGGCATTGTCCTACATGAGCTCATGCACGT
ACTTGGCTTCTGGCATGAGCATTCACGGGCAGATCGGGACCGCTACATCCAAGTCAACTGGAACGAGATC
CTCCCGGGCTTTGAAATCAACTTCATCAAGTCACGGAGTACCAATATGTTAGTTCCCTATGACTACTCAT
CTGTGATGCATTATGGGAGATTTGCCTTCAGCTGGCGTGGGCAGCCCACCATCATACCACTCTGGACCTC
CAGTGTTCACATTGGCCAGCGATGGAACCTGAGTACCTCAGATATCACCCGGGTCTGCAGGCTGTATAAC
TGCAGCCGGAGTGTCCCTGACTCCCACGGGAGAGGGTTTGAGGCCCAGAGTGATGGAAGCAGCCTCACCC
CTGCCTCTATATCACGTCTACAAAGACTTCTCGAGGCACTGTCAGAGGAATCTGGAAGCTCTGCCCCTAG
TGGCTCCAGGACTGGAGGCCAGAGTATTGCCGGGCTTGGTAACAGCCAGCAAGGATGGGAGCATCCTCCT
CAGAGCACATTCAGTGTGGGAGCCTTGGCAAGACCACCTCAGATGCTAGCCGATGCTTCAAAATCGGGGC
CTGGAGCAGGTGCAGACAGCTTGTCTCTAGAGCAGTTCCAGCTAGCCCAGGCCCCCACTGTACCTCTTGC
TCTATTTCCAGAAGCCAGAGACAAGCCAGCACCTATCCAAGATGCCTTTGAGAGGCTAGCTCCACTTCCA
GGAGGCTGTGCACCTGGAAGTCACATTAGAGAGGTGCCCAGAGACTGA

Translation (435 aa):
MGIMGSLWPWILTMLSLLGLSMGAPSASRCSGVCSTSVPEGFTPEGSPVFQDKDIPAINQGLISEETPES
SFLVEGDIIRPSPFRLLSVTNNKWPKGVGGFVEIPFLLSRKYDELSRRVIMDAFAEFERFTCIRFVAYHG
QRDFVSILPMAGCFSGVGRSGGMQVVSLAPTCLRKGRGIVLHELMHVLGFWHEHSRADRDRYIQVNWNEI
LPGFEINFIKSRSTNMLVPYDYSSVMHYGRFAFSWRGQPTIIPLWTSSVHIGQRWNLSTSDITRVCRLYN
CSRSVPDSHGRGFEAQSDGSSLTPASISRLQRLLEALSEESGSSAPSGSRTGGQSIAGLGNSQQGWEHPP
QSTFSVGALARPPQMLADASKSGPGAGADSLSLEQFQLAQAPTVPLALFPEARDKPAPIQDAFERLAPLP
GGCAPGSHIREVPRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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