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Report for CCDS71131.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71131.1 Public Mus musculus 2 Slc30a4 23 108 98 CCDS HistoryNCBI Gene:22785Re-query CCDS DB by CCDS ID:71131.1Re-query CCDS DB by GeneID:22785See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71131.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099457.3 ENSMUSP00000097056.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099457.3Link to Ensembl Protein Viewer:ENSMUSP00000097056.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099457Re-query CCDS DB by Protein ID:ENSMUSP00000097056
Original member Current member NCBI NM_001290993.1 NP_001277922.1 Accepted alive Link to Nucleotide Sequence:NM_001290993.1Link to Protein Sequence:NP_001277922.1Re-query CCDS DB by Nucleotide ID:NM_001290993Re-query CCDS DB by Protein ID:NP_001277922Link to BLAST:NP_001277922.1

Chromosomal Locations for CCDS 71131.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 122685179 122685333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122685998 122686132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122686951 122687056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122687864 122688068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122689399 122689552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122702030 122702420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGGCCGGCCCCGGCGCGTGGAAGCGCCTCAAATCCCTGCTGAGGAAAGACGACACGCCGCTGTTCTTAA
ATGACACCAGCGCCTTCGACTTCTCGGACGAGGTGAGCGACGAGGGGCTTTCGCGCTTTAATAAACTTCG
AGTCGTGGTGGCCGACGATGACTCGGAAGCCCCGGAAAGGCCTGTGAACGGGGCGCACCCGGCCCTCCAG
GCCGACGATGACTCCTTATTGGACCAGGACTTACCTTTAACCAACAGTCAGCTGAGTTTGAAAATGGACC
CCTGTGACAACTGCAGCAAGCGACGCGAGTTGCTGAAGCAGAGGAAGGTGAAGACCAGGCTGACCATCGC
TGCCGTCCTCTACTTGCTTTTCATGATCGGAGAGCTTGTAGAGGTTTTGTCGGCCATGATCAGTGTAATG
CTGGTGTATGTACTAATGGGATTCCTCTTATATGAGGCTGTGCAGAGAACCATCCATATGAACTATGAAA
TAAACGGCGATGTCATGCTCATCACTGCAGCTGTTGGAGTTGCAGTTAATGTAATAATGGGGTTTCTGTT
GAACCAGTCCGGTCACCACCATTCTCACGCTCATTCCCACTCCCTGCCTTCAAATTCCCCAAGCATGGTA
TCTAGTGGACACAACCATGGGCAGGACAGCTTGGCAGTGAGAGCTGCATTTGTACACGCCTTGGGAGACT
TGGTACAAAGTGTTGGTGTGCTTATAGCTGCATACATCATACGATTCAAGCCAGAATACAAGATTGCTGA
TCCCATCTGTACGTATATATTTTCATTGCTTGTGGCTTTCACAACGTTTCGCATCATATGGGACACAGTA
GTGATAATCCTGGAAGGTGTACCAAGCCATTTGAATGTAGATTATATCAAAGAGTCGTTGATGAAAATAG
AAGATGTATATTCTGTGGAAGATTTGAATATCTGGTCTCTCACTTCTGGAAAATCCACTGCCATAGTTCA
CATGCAGCTAATTCCTGGAAGTTCATCTAAATGGGAAGAAGTACAGTCCAAAGCTAAGCATTTATTACTG
AACACGTTTGGCATGTACAAATGCACTATTCAGCTCCAGAGTTACAGACAAGAAGTGATCAGAACTTGTG
CAAATTGTCACAGTTCCAGTACCTGA

Translation (381 aa):
MAGPGAWKRLKSLLRKDDTPLFLNDTSAFDFSDEVSDEGLSRFNKLRVVVADDDSEAPERPVNGAHPALQ
ADDDSLLDQDLPLTNSQLSLKMDPCDNCSKRRELLKQRKVKTRLTIAAVLYLLFMIGELVEVLSAMISVM
LVYVLMGFLLYEAVQRTIHMNYEINGDVMLITAAVGVAVNVIMGFLLNQSGHHHSHAHSHSLPSNSPSMV
SSGHNHGQDSLAVRAAFVHALGDLVQSVGVLIAAYIIRFKPEYKIADPICTYIFSLLVAFTTFRIIWDTV
VIILEGVPSHLNVDYIKESLMKIEDVYSVEDLNIWSLTSGKSTAIVHMQLIPGSSSKWEEVQSKAKHLLL
NTFGMYKCTIQLQSYRQEVIRTCANCHSSST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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