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Report for CCDS70558.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70558.1 Public Mus musculus 14 Itih4 23 108 98 CCDS HistoryNCBI Gene:16427Re-query CCDS DB by CCDS ID:70558.1Re-query CCDS DB by GeneID:16427See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70558.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168782.3 ENSMUSP00000125920.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168782.3Link to Ensembl Protein Viewer:ENSMUSP00000125920.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168782Re-query CCDS DB by Protein ID:ENSMUSP00000125920
Original member Current member NCBI NM_001289632.1 NP_001276561.1 Accepted alive Link to Nucleotide Sequence:NM_001289632.1Link to Protein Sequence:NP_001276561.1Re-query CCDS DB by Nucleotide ID:NM_001289632Re-query CCDS DB by Protein ID:NP_001276561Link to BLAST:NP_001276561.1

Chromosomal Locations for CCDS 70558.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 30886529 30886618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30887805 30887965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30889573 30889677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30889797 30889959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30890099 30890209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30890649 30890777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30891381 30891497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30891704 30891872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30891953 30892078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30892266 30892447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30892536 30892721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30895028 30895167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30895404 30895558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30895811 30895840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30896103 30896162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30896558 30896770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30897857 30897889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30897980 30898096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30899320 30899488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30900885 30901039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30901135 30901231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30901635 30901704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2778 nt):
ATGAAGAGCCCTGCCCCTGCCCACATGTGGAACCTTGTGCTGTTCTTGCCTTCACTGTTGGCTGTGCTTC
CGACCACTACTGCCGAGAAGAATGGCATCGATATCTACAGCCTCACGGTGGACTCCCGGGTCTCTTCCCG
ATTTGCCCATACTGTTGTCACCAGCCGGGTGGTCAACAGAGCCGATGCTGTTCAAGAAGCGACCTTCCAA
GTAGAGCTACCCAGGAAAGCCTTCATCACCAACTTTTCCATGATCATCGATGGCGTGACCTACCCAGGGG
TTGTCAAAGAGAAGGCCGAAGCCCAGAAACAATACAGTGCCGCCGTGGGCAGGGGAGAGAGTGCTGGCAT
CGTCAAGACCACTGGGAGGCAGACAGAGAAGTTTGAAGTGTCAGTCAACGTGGCCCCTGGTTCCAAGATT
ACCTTCGAACTCATATACCAGGAACTGCTCCAAAGGCGACTGGGAATGTATGAGCTACTCCTCAAAGTGA
GGCCTCAGCAGCTGGTGAAGCACCTTCAGATGGACATCTACATCTTTGAGCCTCAGGGTATTAGCATCCT
GGAGACAGAGAGCACCTTCATGACCCCGGAGCTGGCAAATGCCCTTACCACTTCACAGAACAAGACCAAG
GCTCATATCCGGTTCAAGCCGACGCTCTCCCAGCAACAGAAGTCTCAGAGTGAGCAGGACACGGTGCTGA
ATGGGGACTTCATCGTCCGCTATGATGTCAACCGGTCTGACTCTGGGGGCTCCATTCAGATTGAGGAAGG
CTACTTTGTGCACCACTTTGCTCCAGAGAACCTTCCTACAATGTCCAAGAATGTGATCTTTGTCATTGAT
AAAAGCGGATCTATGTCAGGCAAGAAAATCCAGCAGACCCGAGAAGCCCTAGTCAAGATCTTGAAAGACC
TCAGCCCCCAAGACCAGTTCAACCTCATTGAGTTCAGTGGGGAAGCAAACCAATGGAAGCAGTCACTGGT
GCAAGCGACAGAAGAGAATTTGAACAAGGCTGTAAACTATGCTTCCAGGATCCGGGCTCACGGAGGGACC
AACATCAATAATGCAGTGCTGTTGGCTGTGGAGCTGCTGGACAGAAGCAACCAAGCTGAGCTACTGCCCT
CGAAGAGCGTCTCCCTTATCATCCTGCTCACGGACGGTGACCCCACTGTGGGAGAAACCAACCCCACGAT
TATCCAGAACAACGTGCGGGAAGCCATCAATGGGCAGTATAGCCTCTTCTGCCTGGGGTTCGGCTTTGAT
GTGAACTATCCTTTCCTGGAGAAGATGGCACTGGACAATGGTGGCCTGGCCAGGCGCATCTATGAGGATT
CAGACTCTGCACTGCAGCTTCAGGATTTCTACCACGAAGTAGCCAATCCACTGCTCTCATCAGTGGCCTT
CGAATACCCCAGTGATGCTGTGGAGGAAGTCACTCGGTACAAGTTCCAACACCACTTTAAGGGCTCAGAG
ATGGTGGTGGCTGGGAAGCTCCAGGACCAGGGTCCTGATGTCCTCTTAGCCAAAGTCAGTGGGCAGATGC
ACATGCAGAACATCACTTTCCAAACGGAGGCCAGCGTAGCCCAACAAGAGAAGGAGTTTAAGAGCCCCAA
GTACATCTTTCACAACTTTATGGAGAGACTGTGGGCACTGCTGACTATACAGCAACAGCTGGAGCAGAGG
ATTTCAGCGTCAGGTGCCGAATTAGAGGCCCTCGAGGCCCAAGTTCTGAACTTGTCACTCAAGTACAATT
TTGTCACCCCTCTCACGCACATGGTGGTCACCAAACCTGAAGGTCAAGAACAATTCCAAGTTGCTGAGAA
GCCTGTGGAAGTCGGTGATGGCATGCAGAGACTCCCCTTAGCAGCTCAAGCCCACCCCTTCAGGCCTCCT
GTCAGAGGATCTAAACTGATGACCGTGCTGAAAGGAAGCAGGTCCCAGATACCCAGACTCGGTGATGCCG
TTAGGGCATCTAGGCAATACATTCCTCCCGGATTCCCCGGACCTCCTGGACCTCCCGGATTTCCTGCACC
TCCTGGACCTCCTGGATTTCCTGCACCCCCTGGACCTCCTCTTGCTTCTGGCTCTGACTTCAGCCTTCAG
CCTTCCTATGAAAGGATGCTAAGCCTGCCCTCCGTTGAAAGCACCATACCAGAGGAATCCCCAAACCCAG
ACCACCCCCAGGTTCCTACTATTACCTTGCCGCTTCCGGGATCCAGTGTGGACCAGCTCTGTGTGGATAT
CTTACATTCTGAGAAGCCCATGAAGCTGTTCGTAGACCCCAGTCAGGGTCTGGAGGTGACTGGTAAGTAT
GAGAATACTGGGTTCTCGTGGCTCGAAGTGACCATCCAGAAGCCTCACCTGCAGGTCCATGCAACCCCTG
AACGACTGGTGGTGACACGAGGCAGAAAAAACACTGAATACAAGTGGAAGAAGACGCTGTTCTCTGTGTT
ACCTGGCTTGAAGATGACCATGAATATGATGGGACTCCTACAGCTCAGTGGCCCAGACAAAGTCACCATC
GGCCTCCTGTCCCTGGATGACCCTCAGAGAGGACTAATGCTGCTTTTGAATGACACCCAGCACTTCTCCA
ACAACGTTAAAGGGGAGCTTGGTCAGTTTTACCGGGACATCGTCTGGGAGCCACCCGTCGAGCCAGATAA
TACAAAACGGACAGTCAAAGTTCAAGGAGTTGACTACCTGGCTACCAGAGAGCTCAAGTTGAGTTACCAA
GAAGGGTTCCCAGGAGCAGAGATTTCCTGCTGGACAGTGGAGATATAG

Translation (925 aa):
MKSPAPAHMWNLVLFLPSLLAVLPTTTAEKNGIDIYSLTVDSRVSSRFAHTVVTSRVVNRADAVQEATFQ
VELPRKAFITNFSMIIDGVTYPGVVKEKAEAQKQYSAAVGRGESAGIVKTTGRQTEKFEVSVNVAPGSKI
TFELIYQELLQRRLGMYELLLKVRPQQLVKHLQMDIYIFEPQGISILETESTFMTPELANALTTSQNKTK
AHIRFKPTLSQQQKSQSEQDTVLNGDFIVRYDVNRSDSGGSIQIEEGYFVHHFAPENLPTMSKNVIFVID
KSGSMSGKKIQQTREALVKILKDLSPQDQFNLIEFSGEANQWKQSLVQATEENLNKAVNYASRIRAHGGT
NINNAVLLAVELLDRSNQAELLPSKSVSLIILLTDGDPTVGETNPTIIQNNVREAINGQYSLFCLGFGFD
VNYPFLEKMALDNGGLARRIYEDSDSALQLQDFYHEVANPLLSSVAFEYPSDAVEEVTRYKFQHHFKGSE
MVVAGKLQDQGPDVLLAKVSGQMHMQNITFQTEASVAQQEKEFKSPKYIFHNFMERLWALLTIQQQLEQR
ISASGAELEALEAQVLNLSLKYNFVTPLTHMVVTKPEGQEQFQVAEKPVEVGDGMQRLPLAAQAHPFRPP
VRGSKLMTVLKGSRSQIPRLGDAVRASRQYIPPGFPGPPGPPGFPAPPGPPGFPAPPGPPLASGSDFSLQ
PSYERMLSLPSVESTIPEESPNPDHPQVPTITLPLPGSSVDQLCVDILHSEKPMKLFVDPSQGLEVTGKY
ENTGFSWLEVTIQKPHLQVHATPERLVVTRGRKNTEYKWKKTLFSVLPGLKMTMNMMGLLQLSGPDKVTI
GLLSLDDPQRGLMLLLNDTQHFSNNVKGELGQFYRDIVWEPPVEPDNTKRTVKVQGVDYLATRELKLSYQ
EGFPGAEISCWTVEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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