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Report for CCDS57597.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57597.1 Public Mus musculus 7 Cars1 23 108 98 CCDS HistoryNCBI Gene:27267Re-query CCDS DB by CCDS ID:57597.1Re-query CCDS DB by GeneID:27267See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57597.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105909.3 ENSMUSP00000101529.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105909.3Link to Ensembl Protein Viewer:ENSMUSP00000101529.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000105909Re-query CCDS DB by Protein ID:ENSMUSP00000101529
Original member Current member NCBI NM_001252593.1 NP_001239522.1 Accepted alive Link to Nucleotide Sequence:NM_001252593.1Link to Protein Sequence:NP_001239522.1Re-query CCDS DB by Nucleotide ID:NM_001252593Re-query CCDS DB by Protein ID:NP_001239522Link to BLAST:NP_001239522.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239522.1 748 Q9ER72-2 748 100% 0 0

Chromosomal Locations for CCDS 57597.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 143557872 143558006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143559128 143559211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143559649 143559708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143561859 143561926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143562961 143563041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143564984 143565065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143568315 143568383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143568933 143569122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143569400 143569497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143569833 143569936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143570020 143570149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143570542 143570670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143571484 143571596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143574513 143574634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143575918 143576006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143576586 143576726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143584648 143584797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143585699 143585797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143586415 143586511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143587105 143587193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143588492 143588583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143599982 143600006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2247 nt):
ATGGCAGGTTCCTCCGCGGAGCAGGGTAAAGGCCGGCGAGTGCAGCCTCAGTGGTCCCCCCCAGCAGGGA
CTGAGCCCTGCAGGCTCCGCCTCTATAATAGCCTCACCCGGAACAAGGATGTATTTATACCTCAAGATGG
GAAGAAGGTGACGTGGTACTGTTGCGGGCCGACTGTCTATGATGCGTCTCACATGGGACATGCCAGGTCC
TACATCTCCTTCGATATCCTGAGGAGGGTGCTGAGGGATTACTTCCAGTATGATGTCTTTTACTGCATGA
ACATCACAGACATTGATGATAAGATCATCAGGCGGGCACGGCAGAACTACCTGTTTGAGCAGTATCGGGA
GCAGAAACCCCCAGCCACCCAGCTCCTGAAGGATGTCCGTGATGCCATGAAGCCATTTTCAGTCAAGTTA
AGTGAGACAACAGATCCCGACAAGAGGCAGATGCTGGAGCGGATCCAGAACTCTGTGAAACTTGCCACAG
AACCACTGGAACAGGCTGTGCGATCCAGCCTCTCTGGAGAGGAAGTAGACAGCAAAGTACAGGTGTTGCT
GGAGGAAGCAAAGGACTTGCTCTCTGACTGGCTGGATTCCACAGGTGGCAGTGAGGTGACTGACAACTCG
ATTTTCTCCAAACTGCCCAAGTTCTGGGAAGAAGAGTTCCACAAAGACATGGAAGCCCTGAATGTTCTCC
CTCCTGATGTCCTAACCCGTGTCAGTGAATATGTGCCAGAAATTGTGAACTTCGTCCAGAAGATTGTGGA
CAATGGTTATGGTTATGCTTCAAATGGATCTGTTTACTTCGACACAGCCAAGTTTGCTGCTAGTGAAAAG
CACTCCTATGGGAAGCTGGTGCCTGAGGCCGTTGGGGATCAGAAGGCACTTCAGGAAGGGGAAGGTGATC
TGAGCATCTCTGCTGACCGCCTTAGTGAGAAACGCTCTCCCAATGACTTTGCCTTGTGGAAGGCCTCCAA
GCCAGGCGAGCCATCCTGGCCTTGCCCCTGGGGAAAGGGTCGTCCCGGATGGCACATAGAGTGTTCTGCT
ATGGCAGGCACGCTCCTGGGAGCCTCAATGGACATTCATGGTGGAGGGTTTGACCTCCGCTTCCCCCACC
ATGACAATGAGCTGGCACAGTCGGAGGCCTACTTTGAAAATGACTGCTGGGTCAGGTACTTCTTGCACAC
GGGCCACTTGACGATAGCAGGCTGCAAGATGTCCAAGTCACTGAAAAACTTTATCACCATTAAAGATGCC
TTGAAGAAGCACTCAGCACGGCAGCTGCGACTGGCATTCCTCATGCACTCATGGAAAGACACACTGGACT
ATTCCAGCAACACTATGGAGTCTGCTCTTCAGTATGAAAAATTCATGAACGAGTTTTTCTTAAATGTGAA
AGACATCCTCCGAGCCCCTGTAGACATCACTGGCCAGTTTGAAAAGTGGGAAGCTGAAGAAGTGGAGCTA
AATAAGAACTTCTATGGCAAGAAGACCGCAGTTCACGAAGCCTTGTGTGATAACATTGACACCCGGACTG
TCATGGAAGAGATGCGGGCTTTGGTCAGTCAGTGCAACCTCTACATGGCAGCCAGGAAGGCTGAACGGAG
GAGGCCCAACCGGGCTCTGCTGGAGAACATTGCCATGTACCTCACCCACATGCTGAAGATCTTTGGGGCC
ATAGAGGAGGAGAGCCCCCTGGGGTTCCCAGTTGGTGGGCCTGGAACCAACCTGAACCTCGAGTCAACAG
TCATGCCCTACCTTCAGGTGTTATCAGAATTCAGAGAGGGAGTACGAAAGATTGCCCGAGAGAAAAAAGT
TCTTGAGGTTCTACAGCTCAGTGATGCCCTCCGGGATGACATCCTGCCTGAGCTTGGGGTCCGGTTTGAA
GACCATGAAGGGCTGCCAACAGTGGTGAAGTTGGTGGACAGAGACACCTTACTGAAAGAGAAGGAAGGAA
AGAAAAGGGCTGAAGAAGAGAAGAGGAGGAAGAAAGAGGAGGCGGCCAGAAAGAAACAGGAGCAAGAAGC
AGCAAAGCTGGCCAAGATGAAGATACCACCCAGTGAGATGTTCCTGTCAGAAGTCAACAAGTATTCTAAA
TTTGATGAAAATGGTCTGCCTACCCACGACACCGAAGGCAAAGAGCTGAGCAAGGGCCAGGCCAAGAAGC
TGAAGAAGCTCTTTGAAGCCCAGGAGAAACTGTACAAGGAGTATCTGCAAATGTTACAGAATGGCAGCCT
CCAGTGA

Translation (748 aa):
MAGSSAEQGKGRRVQPQWSPPAGTEPCRLRLYNSLTRNKDVFIPQDGKKVTWYCCGPTVYDASHMGHARS
YISFDILRRVLRDYFQYDVFYCMNITDIDDKIIRRARQNYLFEQYREQKPPATQLLKDVRDAMKPFSVKL
SETTDPDKRQMLERIQNSVKLATEPLEQAVRSSLSGEEVDSKVQVLLEEAKDLLSDWLDSTGGSEVTDNS
IFSKLPKFWEEEFHKDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYASNGSVYFDTAKFAASEK
HSYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRPGWHIECSA
MAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTIAGCKMSKSLKNFITIKDA
LKKHSARQLRLAFLMHSWKDTLDYSSNTMESALQYEKFMNEFFLNVKDILRAPVDITGQFEKWEAEEVEL
NKNFYGKKTAVHEALCDNIDTRTVMEEMRALVSQCNLYMAARKAERRRPNRALLENIAMYLTHMLKIFGA
IEEESPLGFPVGGPGTNLNLESTVMPYLQVLSEFREGVRKIAREKKVLEVLQLSDALRDDILPELGVRFE
DHEGLPTVVKLVDRDTLLKEKEGKKRAEEEKRRKKEEAARKKQEQEAAKLAKMKIPPSEMFLSEVNKYSK
FDENGLPTHDTEGKELSKGQAKKLKKLFEAQEKLYKEYLQMLQNGSLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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